Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31388
         (355 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po...    25   3.4  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    25   3.4  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    25   4.5  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   4.5  
SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc...    24   7.9  

>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 340 CTHQDRTARLTHKSNFTQTLL 278
           C H +R +R   K NF+QT+L
Sbjct: 27  CRHGERCSRKHVKPNFSQTIL 47


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 333 TRIAQHD*PTSQTLHKHY*AHRITSG*SETRPRA 232
           +R   H+ P+S  LH+H  AH +TS    T+  A
Sbjct: 420 SRATIHERPSSSILHRH--AHSLTSSSFSTKTLA 451


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = -2

Query: 117 IASFFQQVVELHMGSNYANYER 52
           +AS FQ++  ++MGS + N+++
Sbjct: 144 VASTFQKLHNMYMGSTHLNFKK 165


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -1

Query: 310 THKSNFTQTLLSTQDNVWVIGNTAAGDKHATLTTIKGVV 194
           TH+   ++TL S+    W++G      K    T + G+V
Sbjct: 287 THRRAQSETLFSSCREPWLVGKLYKWCKEEVFTALGGLV 325


>SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 243 VFPITQTLSCVLSSVCVKFDLWVSRA 320
           VFPIT+ + CV++         VSRA
Sbjct: 67  VFPITKGIGCVMTGSIADARAQVSRA 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,488,346
Number of Sequences: 5004
Number of extensions: 27072
Number of successful extensions: 76
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)