Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31388
         (355 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0072 - 20682424-20682870,20683928-20684854                       26   7.4  
09_01_0154 + 2298432-2299415                                           26   9.8  
05_04_0239 + 19320996-19321284,19321461-19321482,19321809-193219...    26   9.8  
01_05_0188 + 19055421-19056857                                         26   9.8  

>09_06_0072 - 20682424-20682870,20683928-20684854
          Length = 457

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +1

Query: 193 PPHP*SSSTLRVYRPR 240
           PPH  SSSTLR  RPR
Sbjct: 34  PPHTPSSSTLRRRRPR 49


>09_01_0154 + 2298432-2299415
          Length = 327

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +3

Query: 207 IVVNVACLSPAAVFPITQTLSCVLSSVCVKFDLWV 311
           ++  +ACL PAA+ P+    + +   +   F +W+
Sbjct: 241 VLTLIACLVPAAICPVYTIAAALSDELLFTFYVWL 275


>05_04_0239 +
           19320996-19321284,19321461-19321482,19321809-19321935,
           19322198-19322288,19322645-19322734,19322832-19322833,
           19323095-19323247
          Length = 257

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 341 MYTPGSHSTTNPQVKLYTNTTKHTG*RLGDRKHGRG 234
           +Y+P      +P ++   N T++TG   GD  HG G
Sbjct: 37  VYSPAPSPQKHPCLENPPNMTENTGGEAGDVVHGYG 72


>01_05_0188 + 19055421-19056857
          Length = 478

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 229 YRPRPCFRSPRRYPVCL 279
           +RPRPC+R+P  +  CL
Sbjct: 77  FRPRPCYRAP--FATCL 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,834,347
Number of Sequences: 37544
Number of extensions: 187069
Number of successful extensions: 337
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)