Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31388
         (355 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U89994-1|AAB50147.1|  497|Drosophila melanogaster gag protein pr...    27   5.2  
U67066-1|AAB17271.1|  264|Drosophila melanogaster U2 snRNP auxil...    27   6.9  
AY061228-1|AAL28776.1|  608|Drosophila melanogaster LD16826p pro...    27   6.9  
AY058537-1|AAL13766.1|  264|Drosophila melanogaster LD24048p pro...    27   6.9  
AE014134-79|AAF51512.1|  264|Drosophila melanogaster CG3582-PA p...    27   6.9  
AE013599-1513|AAF58494.1|  608|Drosophila melanogaster CG8569-PA...    27   6.9  

>U89994-1|AAB50147.1|  497|Drosophila melanogaster gag protein
           protein.
          Length = 497

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 343 QCTHQDRTARLTHKSNFTQTLLSTQDNVW 257
           Q T+ D + R     NF QT   TQ N+W
Sbjct: 350 QLTNPDVSMRSRRTGNFGQTPFPTQGNIW 378


>U67066-1|AAB17271.1|  264|Drosophila melanogaster U2 snRNP
           auxiliary factor protein.
          Length = 264

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 340 CTHQDRTARLTHKSNFTQTLL 278
           C H DR +R+ +K  F+QT+L
Sbjct: 27  CRHGDRCSRIHNKPTFSQTVL 47


>AY061228-1|AAL28776.1|  608|Drosophila melanogaster LD16826p
           protein.
          Length = 608

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -1

Query: 337 THQDRTARLTHKSNFTQTLLSTQD 266
           T Q  T  L H SN  QTLL+T D
Sbjct: 149 TPQTPTPLLDHNSNINQTLLATTD 172


>AY058537-1|AAL13766.1|  264|Drosophila melanogaster LD24048p
           protein.
          Length = 264

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 340 CTHQDRTARLTHKSNFTQTLL 278
           C H DR +R+ +K  F+QT+L
Sbjct: 27  CRHGDRCSRIHNKPTFSQTVL 47


>AE014134-79|AAF51512.1|  264|Drosophila melanogaster CG3582-PA
           protein.
          Length = 264

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 340 CTHQDRTARLTHKSNFTQTLL 278
           C H DR +R+ +K  F+QT+L
Sbjct: 27  CRHGDRCSRIHNKPTFSQTVL 47


>AE013599-1513|AAF58494.1|  608|Drosophila melanogaster CG8569-PA
           protein.
          Length = 608

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -1

Query: 337 THQDRTARLTHKSNFTQTLLSTQD 266
           T Q  T  L H SN  QTLL+T D
Sbjct: 149 TPQTPTPLLDHNSNINQTLLATTD 172


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,618,444
Number of Sequences: 53049
Number of extensions: 322986
Number of successful extensions: 594
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 24,988,368
effective HSP length: 76
effective length of database: 20,956,644
effective search space used: 859222404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)