Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31388
(355 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69662-9|CAA93507.2| 1782|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z69662-8|CAA93506.2| 1776|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z68214-8|CAA92449.2| 1782|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z68214-7|CAA92448.2| 1776|Caenorhabditis elegans Hypothetical pr... 29 1.2
AY396716-1|AAR29589.1| 1800|Caenorhabditis elegans DAF-15 protein. 29 1.2
U88182-4|AAB42307.1| 113|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z83221-3|CAB05705.1| 498|Caenorhabditis elegans Hypothetical pr... 26 8.7
AY519856-1|AAR89637.1| 1440|Caenorhabditis elegans nematode poly... 26 8.7
AL021175-8|CAA15970.2| 201|Caenorhabditis elegans Hypothetical ... 26 8.7
AL021175-7|CAE54921.1| 329|Caenorhabditis elegans Hypothetical ... 26 8.7
AF106581-2|AAR25643.1| 1198|Caenorhabditis elegans Nematode poly... 26 8.7
AF106581-1|AAC78208.1| 1440|Caenorhabditis elegans Nematode poly... 26 8.7
>Z69662-9|CAA93507.2| 1782|Caenorhabditis elegans Hypothetical protein
C10C5.6b protein.
Length = 1782
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -3
Query: 341 MYTPGSHSTTNPQVKLYTNT 282
MY+PGS T P KL TNT
Sbjct: 1523 MYSPGSKQQTGPGAKLNTNT 1542
>Z69662-8|CAA93506.2| 1776|Caenorhabditis elegans Hypothetical protein
C10C5.6a protein.
Length = 1776
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -3
Query: 341 MYTPGSHSTTNPQVKLYTNT 282
MY+PGS T P KL TNT
Sbjct: 1517 MYSPGSKQQTGPGAKLNTNT 1536
>Z68214-8|CAA92449.2| 1782|Caenorhabditis elegans Hypothetical protein
C10C5.6b protein.
Length = 1782
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -3
Query: 341 MYTPGSHSTTNPQVKLYTNT 282
MY+PGS T P KL TNT
Sbjct: 1523 MYSPGSKQQTGPGAKLNTNT 1542
>Z68214-7|CAA92448.2| 1776|Caenorhabditis elegans Hypothetical protein
C10C5.6a protein.
Length = 1776
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -3
Query: 341 MYTPGSHSTTNPQVKLYTNT 282
MY+PGS T P KL TNT
Sbjct: 1517 MYSPGSKQQTGPGAKLNTNT 1536
>AY396716-1|AAR29589.1| 1800|Caenorhabditis elegans DAF-15 protein.
Length = 1800
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -3
Query: 341 MYTPGSHSTTNPQVKLYTNT 282
MY+PGS T P KL TNT
Sbjct: 1541 MYSPGSKQQTGPGAKLNTNT 1560
>U88182-4|AAB42307.1| 113|Caenorhabditis elegans Hypothetical
protein C53C11.2 protein.
Length = 113
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 225 CLSPAAVFPITQTLSCVLSSVCVKF 299
CL A+ I L C+L +CVKF
Sbjct: 33 CLILTAIVAIAAILGCILLLLCVKF 57
>Z83221-3|CAB05705.1| 498|Caenorhabditis elegans Hypothetical
protein C49A1.5 protein.
Length = 498
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 105 FQQVVELHMGSNYANYERHEH 43
F V+ H G+NY Y R EH
Sbjct: 273 FNSVLAAHPGTNYLFYGRREH 293
>AY519856-1|AAR89637.1| 1440|Caenorhabditis elegans nematode
polyprotein allergen related,post-translationnally
cleaved, the diverse 14.5 kDa cleavageproducts bind
lipids and retinol (164.6 kD) protein.
Length = 1440
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/40 (32%), Positives = 26/40 (65%)
Frame = -1
Query: 310 THKSNFTQTLLSTQDNVWVIGNTAAGDKHATLTTIKGVVE 191
T K+ F+ LL+++++ + + A+GDK A+ +KG V+
Sbjct: 952 TCKTYFSP-LLTSEESEKIKEHVASGDKEASKALVKGAVD 990
>AL021175-8|CAA15970.2| 201|Caenorhabditis elegans Hypothetical
protein Y6E2A.9b protein.
Length = 201
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -3
Query: 110 VSFSKWLNYIWAQITRITNGMSIHATTQKQHSTSYF 3
+ FS W+N + I TN TT +Q SYF
Sbjct: 120 IIFSHWINQSFNAIVNYTNRSGNCRTTNQQLLYSYF 155
>AL021175-7|CAE54921.1| 329|Caenorhabditis elegans Hypothetical
protein Y6E2A.9a protein.
Length = 329
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -3
Query: 110 VSFSKWLNYIWAQITRITNGMSIHATTQKQHSTSYF 3
+ FS W+N + I TN TT +Q SYF
Sbjct: 120 IIFSHWINQSFNAIVNYTNRSGNCRTTNQQLLYSYF 155
>AF106581-2|AAR25643.1| 1198|Caenorhabditis elegans Nematode
polyprotein allergen relatedprotein 1, isoform c
protein.
Length = 1198
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/40 (32%), Positives = 26/40 (65%)
Frame = -1
Query: 310 THKSNFTQTLLSTQDNVWVIGNTAAGDKHATLTTIKGVVE 191
T K+ F+ LL+++++ + + A+GDK A+ +KG V+
Sbjct: 710 TCKTYFSP-LLTSEESEKIKEHVASGDKEASKALVKGAVD 748
>AF106581-1|AAC78208.1| 1440|Caenorhabditis elegans Nematode
polyprotein allergen relatedprotein 1, isoform a protein.
Length = 1440
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/40 (32%), Positives = 26/40 (65%)
Frame = -1
Query: 310 THKSNFTQTLLSTQDNVWVIGNTAAGDKHATLTTIKGVVE 191
T K+ F+ LL+++++ + + A+GDK A+ +KG V+
Sbjct: 952 TCKTYFSP-LLTSEESEKIKEHVASGDKEASKALVKGAVD 990
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,371,772
Number of Sequences: 27780
Number of extensions: 159490
Number of successful extensions: 331
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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