Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31382
         (436 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   2.9  
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    26   2.9  
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom...    25   3.8  
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    24   8.8  
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma...    24   8.8  

>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 166 YCYIPLVLIQLFLRVGQLFMYVLIS*NN*DLF 71
           YC   +++ Q FLR+ +   Y L+  N  D+F
Sbjct: 275 YCACKVIVYQFFLRIPETDTYTLVVNNVDDVF 306


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 166 YCYIPLVLIQLFLRVGQLFMYVLIS*NN*DLF 71
           YC   +++ Q FLR+ +   Y L+  N  D+F
Sbjct: 275 YCACKVIVYQFFLRIPETDTYTLVVNNVDDVF 306


>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 412

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 289 PLNVFQRYLFTYLLNRATFVHIYVKVV 209
           PLN+ ++  F Y L  A F HI  K +
Sbjct: 280 PLNLSEKKFFAYQLQYAAFQHICQKTL 306


>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 152 ISFNSIISSGWATVYVCTHII 90
           I F+SII  GW  V + T +I
Sbjct: 140 IVFDSIIGGGWPAVLISTAMI 160


>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -1

Query: 283 NVFQRYLFTYLLNRATFVHIYVKVVEQFIFXHXNVIH*RYCY 158
           NVF R+ F Y L       I+V  V  F+    N+I  R  Y
Sbjct: 216 NVFNRFRFLYALGYGRLFGIFVLCVSLFL---VNIIADRILY 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,659,191
Number of Sequences: 5004
Number of extensions: 31946
Number of successful extensions: 65
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)