Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31382
(436 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42439-1|AAA83505.1| 130|Caenorhabditis elegans Hypothetical pr... 30 0.63
Z54270-7|CAE48496.1| 492|Caenorhabditis elegans Hypothetical pr... 30 0.83
Z54270-6|CAA91028.1| 572|Caenorhabditis elegans Hypothetical pr... 30 0.83
AF179215-1|AAF67039.1| 492|Caenorhabditis elegans NHR-25 beta p... 30 0.83
AF179214-1|AAF67038.1| 568|Caenorhabditis elegans NHR-25 alpha ... 30 0.83
Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical pr... 27 5.9
Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical pr... 27 5.9
U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical pr... 27 5.9
U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical pr... 27 5.9
Z81132-6|CAB03437.1| 315|Caenorhabditis elegans Hypothetical pr... 27 7.8
>U42439-1|AAA83505.1| 130|Caenorhabditis elegans Hypothetical
protein F19C7.6 protein.
Length = 130
Score = 30.3 bits (65), Expect = 0.63
Identities = 9/48 (18%), Positives = 29/48 (60%)
Frame = -1
Query: 340 HNQLNIGVVTNHWIPLHPLNVFQRYLFTYLLNRATFVHIYVKVVEQFI 197
HN+ ++ ++ +HP+ ++ + ++ +L++ A FV ++ +V+ +
Sbjct: 22 HNEARPTMIQSNQTKMHPILIWIQIIYKFLMSSAVFVGLFSTIVQLIV 69
>Z54270-7|CAE48496.1| 492|Caenorhabditis elegans Hypothetical
protein F11C1.6b protein.
Length = 492
Score = 29.9 bits (64), Expect = 0.83
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 189 WXKINCSTTFT*IWTKVALFSK*VNKYLWNTLSGC 293
W ++ C+T F I+ ++ + +YLWN S C
Sbjct: 402 WREVRCTTAFLEIFEQIRRLAYDSLRYLWNLHSNC 436
>Z54270-6|CAA91028.1| 572|Caenorhabditis elegans Hypothetical
protein F11C1.6a protein.
Length = 572
Score = 29.9 bits (64), Expect = 0.83
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 189 WXKINCSTTFT*IWTKVALFSK*VNKYLWNTLSGC 293
W ++ C+T F I+ ++ + +YLWN S C
Sbjct: 482 WREVRCTTAFLEIFEQIRRLAYDSLRYLWNLHSNC 516
>AF179215-1|AAF67039.1| 492|Caenorhabditis elegans NHR-25 beta
protein.
Length = 492
Score = 29.9 bits (64), Expect = 0.83
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 189 WXKINCSTTFT*IWTKVALFSK*VNKYLWNTLSGC 293
W ++ C+T F I+ ++ + +YLWN S C
Sbjct: 402 WREVRCTTAFLEIFEQIRRLAYDSLRYLWNLHSNC 436
>AF179214-1|AAF67038.1| 568|Caenorhabditis elegans NHR-25 alpha
protein.
Length = 568
Score = 29.9 bits (64), Expect = 0.83
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 189 WXKINCSTTFT*IWTKVALFSK*VNKYLWNTLSGC 293
W ++ C+T F I+ ++ + +YLWN S C
Sbjct: 478 WREVRCTTAFLEIFEQIRRLAYDSLRYLWNLHSNC 512
>Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical
protein F39B1.1 protein.
Length = 1607
Score = 27.1 bits (57), Expect = 5.9
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Frame = -1
Query: 343 FHNQLNIGVVTNHWIPLHPLNVFQRYLFTYLLNRATFVHIYVKV-------VEQFIFXHX 185
F N++ + +H+ P PL+++ ++ L I V + + +
Sbjct: 639 FSNKVPKTIKNDHFFPRIPLDLYAKFKRLNLCQYPRETRIVVSISGTVRNSAQAANEYNP 698
Query: 184 NVIH*RYCYIPLVLIQLFLRVGQLFM 107
+++ YC +PL LF+R G LF+
Sbjct: 699 DIVMLGYCSVPLYDENLFMRQGPLFL 724
>Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical
protein F39B1.1 protein.
Length = 1607
Score = 27.1 bits (57), Expect = 5.9
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Frame = -1
Query: 343 FHNQLNIGVVTNHWIPLHPLNVFQRYLFTYLLNRATFVHIYVKV-------VEQFIFXHX 185
F N++ + +H+ P PL+++ ++ L I V + + +
Sbjct: 639 FSNKVPKTIKNDHFFPRIPLDLYAKFKRLNLCQYPRETRIVVSISGTVRNSAQAANEYNP 698
Query: 184 NVIH*RYCYIPLVLIQLFLRVGQLFM 107
+++ YC +PL LF+R G LF+
Sbjct: 699 DIVMLGYCSVPLYDENLFMRQGPLFL 724
>U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical
protein R08E3.1b protein.
Length = 1465
Score = 27.1 bits (57), Expect = 5.9
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 51 SAHGKYVNKS*LFYDMSTYINSCPTRR 131
S + NK+ +FY +S ++NS P +R
Sbjct: 122 SVDNVFRNKNSIFYQLSPFVNSAPPQR 148
>U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical
protein R08E3.1a protein.
Length = 1512
Score = 27.1 bits (57), Expect = 5.9
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 51 SAHGKYVNKS*LFYDMSTYINSCPTRR 131
S + NK+ +FY +S ++NS P +R
Sbjct: 122 SVDNVFRNKNSIFYQLSPFVNSAPPQR 148
>Z81132-6|CAB03437.1| 315|Caenorhabditis elegans Hypothetical
protein T26E4.8 protein.
Length = 315
Score = 26.6 bits (56), Expect = 7.8
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 48 LSAHGKYVNKS*LFYDMSTYINSCPTR 128
LSA+ Y + S L Y M TY+ + PTR
Sbjct: 244 LSAYQNYYSSSLLEYCMLTYLKNGPTR 270
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,001,905
Number of Sequences: 27780
Number of extensions: 174586
Number of successful extensions: 332
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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