Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31378
         (442 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    28   0.73 
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   3.9  
SPBC18H10.15 |ppk23||serine/threonine protein kinase Ppk23|Schiz...    25   3.9  
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac...    25   3.9  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    25   5.2  
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    24   9.0  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    24   9.0  

>SPBC215.10 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 27.9 bits (59), Expect = 0.73
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 391 PGINLRTLSTFGHHRNRLCMVKLTGY 314
           P I+L  +  FG   N +CM +L GY
Sbjct: 234 PSISLENVLAFGDGANDVCMFELAGY 259


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 253 TVFGCTGFVGRYVCNKLGKIGT 318
           T   CTG V  + C+ L KIG+
Sbjct: 691 TSVNCTGIVLSFCCDNLAKIGS 712


>SPBC18H10.15 |ppk23||serine/threonine protein kinase
           Ppk23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 398

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 70  NIVIARIYTVDNTPHLKWTNSM 5
           NI   R+Y + NTP LK  NS+
Sbjct: 50  NIDACRLYLMGNTPELKSCNSI 71


>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 16  SILNGEYYQLYKYELSQYLSHKMAAIALKTQATXKLLH 129
           S L G+Y+  Y Y +  + + K+   AL + AT    H
Sbjct: 409 SYLLGQYFLQYVYSIYDWDAQKIGLAALNSNATSTANH 446


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -1

Query: 391 PGINLRTLSTFGHHRNRLCMVKLTGYQFF 305
           P I  R L   GH +   C +KL G   F
Sbjct: 152 PSIKTRRLGMRGHSKYHYCGIKLRGQDSF 180


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 235 SYCGHQXLAYMLQGWVYDPN 176
           SY  H+  A  ++GW+ DP+
Sbjct: 427 SYNAHKENAIPIEGWISDPS 446


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +1

Query: 40   QLYKYELSQYLSHKMAAIALKTQATXKLLHLNG-SMXXXYIKAAN 171
            QL++ ++ +Y       I  K Q    LL++NG S    +++A N
Sbjct: 873  QLFQLDICEYSGDIFLTIQRKLQDLIDLLYVNGYSNLPPFVRALN 917


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,703,202
Number of Sequences: 5004
Number of extensions: 30491
Number of successful extensions: 77
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)