Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31375
         (556 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.5  
SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch...    27   2.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   9.9  
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    25   9.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   9.9  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +1

Query: 433 SKVSVPPTPPG*AFARPPVLV-KLEXPFGPPL 525
           +  S PP PP    +RPP  V  L  P  PP+
Sbjct: 225 TSTSAPPIPPSIPSSRPPERVPSLSAPAPPPI 256


>SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 185

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 54  WENILIWEKKTLGFPNIYIFF 116
           W+N++IW  +T+ F  I IFF
Sbjct: 43  WKNVMIWGIETMLFGAIGIFF 63


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 13/35 (37%), Positives = 14/35 (40%)
 Frame = +1

Query: 415  PP*DISSKVSVPPTPPG*AFARPPVLVKLEXPFGP 519
            PP  +    S PP P G   A PP L     P  P
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 160 TKIQIFLVELATLA*KKIYILGNP 89
           +KIQ FLV+L  L    I I+G+P
Sbjct: 244 SKIQYFLVKLLALQNSDITIVGDP 267


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +1

Query: 415 PP*DISSKVSVPPTPPG*AFARPP 486
           PP  I      PP PPG A A PP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPP 776


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,349,373
Number of Sequences: 5004
Number of extensions: 48043
Number of successful extensions: 84
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)