Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31375
         (556 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0758 - 36052261-36052301,36052463-36052697,36052895-360529...    29   3.3  
10_08_0067 + 14620852-14621454                                         28   5.8  
11_06_0573 + 25088921-25089035,25089752-25089843,25089990-25091672     27   7.6  
11_04_0347 + 16628129-16628244,16628343-16628512,16629141-166294...    27   7.6  

>03_06_0758 -
           36052261-36052301,36052463-36052697,36052895-36052966,
           36056477-36056567,36056650-36056872,36056964-36057300,
           36057406-36057588
          Length = 393

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = +1

Query: 448 PPTPPG*AFARPPVLVKLEXPFGPPLTF 531
           PP PP  A A PP L     PF  PL F
Sbjct: 144 PPPPPPMAVAPPPFLPPPLRPFAAPLLF 171


>10_08_0067 + 14620852-14621454
          Length = 200

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 491 RTGGRAKAQPGGVGGTETLELISQGGWR 408
           R G  AK + GG GG       +QGGWR
Sbjct: 116 RHGAEAKEKAGGWGGGSRRVKGAQGGWR 143


>11_06_0573 + 25088921-25089035,25089752-25089843,25089990-25091672
          Length = 629

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -3

Query: 491 RTGGRAKAQPGGVGGTETLELISQGGWRIYTL*MSMDSSXHLTP 360
           R GGR  A  GG G  +T+ LI      + TL  ++D    L P
Sbjct: 21  RVGGRRWASAGGAGNNKTMSLIISSE-LVPTLLFALDLQIQLGP 63


>11_04_0347 +
           16628129-16628244,16628343-16628512,16629141-16629409,
           16630337-16630475,16630573-16630639,16630721-16630842,
           16630946-16631085
          Length = 340

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -3

Query: 485 GGRAKAQPGGVGGTETLELIS 423
           GGRA+++PGG GG   LE +S
Sbjct: 35  GGRARSKPGGGGGGGGLEDLS 55


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,424,897
Number of Sequences: 37544
Number of extensions: 325974
Number of successful extensions: 736
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)