Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31371
         (527 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    30   0.19 
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    27   1.7  
SPCC18B5.06 |erf1|sup45|translation release factor eRF1|Schizosa...    27   2.3  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    27   2.3  
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    26   4.0  
SPCC1840.09 |||NAD dependent epimerase/dehydratase family protei...    25   7.0  
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/...    25   9.2  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    25   9.2  

>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 30.3 bits (65), Expect = 0.19
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +2

Query: 11 TGDNS--KPRVLILGGCGFIGRNLVDYLI 91
          TGD    K   LI GG GFIG N +DY +
Sbjct: 2  TGDYKEYKGYALITGGAGFIGSNFLDYAV 30


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 114 FVLWTRPRAQLAFLNPTHSKTFEDPRVEYKSANLINQTS 230
           F+ W R   Q+  L+   S TF+D  +   +A  I +T+
Sbjct: 436 FIKWLRRYTQVELLDYQESSTFKDIAIRLNTAEYIYRTT 474


>SPCC18B5.06 |erf1|sup45|translation release factor
           eRF1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 390

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 17  DNSKPRVLILGGCGFIGRNLVDYLIRNDLVSGLRVVDKT 133
           D  K +V+IL   GF+ R L DY+    +   L+ + K+
Sbjct: 198 DFDKLKVVILASPGFVARGLYDYIFSMAVKLDLKQIVKS 236


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1115

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 26   KPRVLILGGCGFIGRNL-VDYLIRNDLVSGLRVVD 127
            K R+L+  GC F+G  L  D+ I N LV   +VVD
Sbjct: 980  KLRLLVNAGCIFVGHGLQKDFRIINLLVPPEQVVD 1014


>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 487 SSSDLRSSKGQLSNLPFGAYHCAHLS 410
           S+SD+ + K +   LP+   H AHL+
Sbjct: 110 STSDVANKKPKKEKLPYKVIHAAHLT 135


>SPCC1840.09 |||NAD dependent epimerase/dehydratase family
          protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 276

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +2

Query: 32 RVLILGGCGFIGRNL 76
          ++++LGG GF+G N+
Sbjct: 2  KIVVLGGSGFLGHNI 16


>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
           reductase/acetylglutamate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 885

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 10/21 (47%), Positives = 17/21 (80%), Gaps = 1/21 (4%)
 Frame = +2

Query: 20  NSKP-RVLILGGCGFIGRNLV 79
           +SKP +V++LG  G+ G+NL+
Sbjct: 567 SSKPAKVVLLGARGYTGKNLI 587


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -3

Query: 159 GSGKPVELGVLSTTRSPLTRSFLIK*STKFRPMKPHPPSIKTR 31
           G  KP +  +L +T+ P+T       + K     P PPS +++
Sbjct: 640 GPNKPSKNNILKSTQVPVTPKQKSSTANKGSTSSPSPPSSESK 682


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,237,930
Number of Sequences: 5004
Number of extensions: 44307
Number of successful extensions: 128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)