Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31371
(527 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23511-14|AAC46799.1| 357|Caenorhabditis elegans Hypothetical p... 35 0.041
U58761-4|AAB00715.1| 631|Caenorhabditis elegans Hypothetical pr... 32 0.22
U40800-3|AAA81490.1| 467|Caenorhabditis elegans Squashed vulva ... 32 0.29
AY147933-1|AAN39843.1| 467|Caenorhabditis elegans UDP-glucuroni... 32 0.29
U40953-3|AAB52650.1| 342|Caenorhabditis elegans Hypothetical pr... 30 0.89
AC006730-6|AAX22282.1| 324|Caenorhabditis elegans Serpentine re... 29 1.6
AC006730-5|AAF60478.4| 320|Caenorhabditis elegans Serpentine re... 29 1.6
Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical pr... 28 3.6
Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical pr... 28 3.6
L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome cond... 28 3.6
AL022288-4|CAA18365.1| 461|Caenorhabditis elegans Hypothetical ... 27 6.3
>U23511-14|AAC46799.1| 357|Caenorhabditis elegans Hypothetical
protein C32D5.12 protein.
Length = 357
Score = 34.7 bits (76), Expect = 0.041
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = +2
Query: 35 VLILGGCGFIGRNLVDYLIRNDLVSGLRVVDKTPSS 142
V + GG G +GR +V L+ N+ ++ +R++D+ +S
Sbjct: 4 VAVTGGAGLVGRYVVQRLLENEQIAEIRIIDRQSTS 39
>U58761-4|AAB00715.1| 631|Caenorhabditis elegans Hypothetical
protein C01F1.3a protein.
Length = 631
Score = 32.3 bits (70), Expect = 0.22
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +2
Query: 35 VLILGGCGFIGRNLVDYL 88
V+I GGCGFIG N V+Y+
Sbjct: 8 VVITGGCGFIGSNFVNYI 25
>U40800-3|AAA81490.1| 467|Caenorhabditis elegans Squashed vulva
protein 1 protein.
Length = 467
Score = 31.9 bits (69), Expect = 0.29
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +2
Query: 17 DNSKPRVLILGGCGFIGRNLVDYLI 91
+ ++ R+LI GG GF+G +LVD L+
Sbjct: 133 EETRKRILITGGAGFVGSHLVDKLM 157
>AY147933-1|AAN39843.1| 467|Caenorhabditis elegans UDP-glucuronic
acid decarboxylase protein.
Length = 467
Score = 31.9 bits (69), Expect = 0.29
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +2
Query: 17 DNSKPRVLILGGCGFIGRNLVDYLI 91
+ ++ R+LI GG GF+G +LVD L+
Sbjct: 133 EETRKRILITGGAGFVGSHLVDKLM 157
>U40953-3|AAB52650.1| 342|Caenorhabditis elegans Hypothetical
protein F53B1.4 protein.
Length = 342
Score = 30.3 bits (65), Expect = 0.89
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +2
Query: 35 VLILGGCGFIGRNLVDY 85
VLI GGCGFIG N +++
Sbjct: 11 VLITGGCGFIGSNYINF 27
>AC006730-6|AAX22282.1| 324|Caenorhabditis elegans Serpentine
receptor, class i protein40, isoform b protein.
Length = 324
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 212 ICAFVFNAGVLKCFRMCRVQESQLSSGSCPQHEA 111
IC VF L F+M R + ++S+ S +HEA
Sbjct: 204 ICGLVFTYSTLDMFKMLRSVQRRISTASYNRHEA 237
>AC006730-5|AAF60478.4| 320|Caenorhabditis elegans Serpentine
receptor, class i protein40, isoform a protein.
Length = 320
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 212 ICAFVFNAGVLKCFRMCRVQESQLSSGSCPQHEA 111
IC VF L F+M R + ++S+ S +HEA
Sbjct: 204 ICGLVFTYSTLDMFKMLRSVQRRISTASYNRHEA 237
>Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical
protein T21B6.3 protein.
Length = 821
Score = 28.3 bits (60), Expect = 3.6
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -3
Query: 147 PVELGVLST-TRSPLTRSFLIK*STKFRPMKPHPPSIKTRGFELSPVVS 4
PV V++T T+ PL + + T++RP P PP+ +G PVVS
Sbjct: 411 PVLAPVINTATQPPLPQPY----PTRYRPAPPPPPACDGQGCVNPPVVS 455
>Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical protein
R13G10.1 protein.
Length = 1469
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +2
Query: 353 ERGQALRQDEVPRLVEISSGQMCTVISPKRKIAQLTL 463
+R + LR+ E+ +++S+G VI+PKRK +L +
Sbjct: 1354 KRREKLRRAEIEPEIDLSNGLSNVVIAPKRKQRRLEM 1390
>L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome
condensation protein protein.
Length = 1469
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +2
Query: 353 ERGQALRQDEVPRLVEISSGQMCTVISPKRKIAQLTL 463
+R + LR+ E+ +++S+G VI+PKRK +L +
Sbjct: 1354 KRREKLRRAEIEPEIDLSNGLSNVVIAPKRKQRRLEM 1390
>AL022288-4|CAA18365.1| 461|Caenorhabditis elegans Hypothetical
protein ZK1025.7 protein.
Length = 461
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -3
Query: 465 PRVN*AIFLLGL-ITVHICPLEISTSLG 385
P+V+ ++F++ + + IC LEI TSLG
Sbjct: 233 PKVDESVFIIATHMALQICSLEIKTSLG 260
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,714,010
Number of Sequences: 27780
Number of extensions: 261391
Number of successful extensions: 622
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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