Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31371
         (527 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    26   0.21 
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             26   0.21 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   5.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.8  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   7.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   7.8  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 26.2 bits (55), Expect = 0.21
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 272 AGSELCERNSRRSDRGGLCGRNRHPQPERGQALRQ 376
           +GS +  RNS RS+  G CGR         +AL Q
Sbjct: 30  SGSSI-SRNSNRSESSGYCGRRPSTFGSSNEALPQ 63


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 26.2 bits (55), Expect = 0.21
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 272 AGSELCERNSRRSDRGGLCGRNRHPQPERGQALRQ 376
           +GS +  RNS RS+  G CGR         +AL Q
Sbjct: 30  SGSSI-SRNSNRSESSGYCGRRPSTFGSSNEALPQ 63


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 281 ELCERNSRRSDRGGLCGRNRH 343
           EL  R+SRR + GG+   + H
Sbjct: 259 ELVRRDSRRKNYGGVYHLDNH 279


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 199 YSTRGSSNVLECV 161
           Y+ RG+S +L+CV
Sbjct: 113 YAIRGNSAILKCV 125


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 181 SNVLECVGFRKAS*ARGLVHNTKPANQIVPYQ 86
           +N    V F +A  ARG++   + +N   P+Q
Sbjct: 195 ANARAVVLFTRAEDARGILEAARRSNLSQPFQ 226


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 181 SNVLECVGFRKAS*ARGLVHNTKPANQIVPYQ 86
           +N    V F +A  ARG++   + +N   P+Q
Sbjct: 285 ANARAVVLFTRAEDARGILEAARRSNLSQPFQ 316


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,088
Number of Sequences: 438
Number of extensions: 3222
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)