Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31368
(459 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 202 1e-52
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 190 6e-49
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 180 7e-46
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 31 0.45
07_03_0011 + 12370624-12370684,12372573-12372718,12372793-123731... 28 4.2
12_02_0957 + 24807261-24807311,24807436-24807773,24808727-248089... 27 5.5
12_02_0722 - 22521909-22521932,22522291-22522419,22522976-225242... 27 5.5
12_02_0534 - 20103908-20105897,20106314-20107116 27 5.5
02_05_0844 - 32144417-32144764,32145588-32145686,32146218-321464... 27 5.5
04_04_0044 - 22333376-22333898,22335509-22336227 27 7.3
02_03_0106 + 15292869-15296138 27 7.3
02_03_0034 - 14142518-14142923,14142935-14143269,14143976-141440... 27 7.3
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997... 27 9.6
06_01_1092 + 8966584-8967053,8967737-8967854,8968030-8968253,896... 27 9.6
04_04_1108 + 30961600-30962013,30963131-30964465 27 9.6
01_07_0275 + 42434082-42435152 27 9.6
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 202 bits (492), Expect = 1e-52
Identities = 88/114 (77%), Positives = 99/114 (86%)
Frame = +3
Query: 21 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 200
MGRRPARCYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENV 60
Query: 201 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQLG 362
SSEALEA RI CNKY+ KN GKD FH+R+R+HPFHV+RINKMLSCAGADRLQ G
Sbjct: 61 SSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTG 114
Score = 48.8 bits (111), Expect = 2e-06
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = +2
Query: 356 TGMRGAFGKPQGTVARVRIGQPIMSVR 436
TGMRGAFGKPQGT ARV IGQ ++SVR
Sbjct: 113 TGMRGAFGKPQGTCARVDIGQVLLSVR 139
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 190 bits (462), Expect = 6e-49
Identities = 82/110 (74%), Positives = 94/110 (85%)
Frame = +3
Query: 33 PARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEA 212
P RCYR KNKPYPKSR+CRGVPDPKIRIFD+G+K+ + DDFPLCVHLVS E E +SSEA
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEA 371
Query: 213 LEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQLG 362
LEA RI CNKY+ K+ GKD FH+R+ HP+HV+RINKMLSCAGADRLQ G
Sbjct: 372 LEAARIACNKYMAKHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTG 421
Score = 50.0 bits (114), Expect = 9e-07
Identities = 23/30 (76%), Positives = 25/30 (83%)
Frame = +2
Query: 356 TGMRGAFGKPQGTVARVRIGQPIMSVRSID 445
TGMRGAFGKP GT ARVRIGQ ++SVR D
Sbjct: 420 TGMRGAFGKPTGTCARVRIGQVLLSVRCRD 449
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 180 bits (437), Expect = 7e-46
Identities = 78/107 (72%), Positives = 91/107 (85%)
Frame = +3
Query: 42 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 221
CYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+F CVHLVS E E ++SEALEA
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEA 63
Query: 222 GRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQLG 362
RI CNKY+ K+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQ G
Sbjct: 64 ARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTG 110
Score = 48.8 bits (111), Expect = 2e-06
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = +2
Query: 356 TGMRGAFGKPQGTVARVRIGQPIMSVR 436
TGMRGAFGKPQGT ARV IGQ ++SVR
Sbjct: 109 TGMRGAFGKPQGTCARVDIGQVLLSVR 135
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 31.1 bits (67), Expect = 0.45
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 144 TVDDFPLC-VHLVSDEYEQLSSEALEAGRICCNKYLVKNCG 263
T D P C +HL SD Y S E ++AG+ C L K G
Sbjct: 587 TTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQKELG 627
>07_03_0011 +
12370624-12370684,12372573-12372718,12372793-12373129,
12374323-12374452,12375346-12375406,12375572-12375618,
12376873-12376950,12377195-12377345,12377495-12377558,
12377735-12377893,12378007-12378128,12378952-12378981,
12379050-12379124,12379563-12379644,12379809-12379938,
12381417-12382164,12382833-12383054,12383127-12383276,
12384851-12384904,12384985-12385058,12386130-12386204,
12386365-12386584
Length = 1071
Score = 27.9 bits (59), Expect = 4.2
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +1
Query: 13 RSPWGAGQQDATGTAKINRIRNRGSVGVYLIPRSVSSIWVRRERPLTTFHCACTWCP 183
R+ A Q +TGT K + R G + L + V ++ P+ F AC W P
Sbjct: 199 RASKSAWSQSSTGTRKWMQYRPAGETSLTLPCQGVLNLIATGPTPMDVF--ACAWSP 253
>12_02_0957 +
24807261-24807311,24807436-24807773,24808727-24808927,
24809024-24809069,24809284-24809600,24809949-24810072,
24810465-24810537,24810968-24811173,24811384-24811651,
24811780-24811877,24812116-24812379
Length = 661
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 250 TRYLLQQIRPASKASELSCSYSSDTKCTHSGKSS 149
+R+ ++ P+ ELSC ++T C H G S
Sbjct: 85 SRFKVRIFNPSGCEKELSCVMMNNTPCGHEGSMS 118
>12_02_0722 -
22521909-22521932,22522291-22522419,22522976-22524242,
22524659-22525461
Length = 740
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 291 LHPFHVIRINKMLSCAGADRLQLGCVVRLASLKVL 395
L FHV+R+ ++ C+G D+ L + +L L+ L
Sbjct: 573 LSSFHVLRVLQLEDCSGMDKNHLNHLDKLLLLRFL 607
>12_02_0534 - 20103908-20105897,20106314-20107116
Length = 930
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 291 LHPFHVIRINKMLSCAGADRLQLGCVVRLASLKVL 395
L FHV+R+ ++ C+G D+ L + +L L+ L
Sbjct: 583 LSSFHVLRVLQLEDCSGMDKNHLNHLDKLRLLRFL 617
>02_05_0844 -
32144417-32144764,32145588-32145686,32146218-32146410,
32147049-32147107,32147189-32147263,32147557-32147670,
32147776-32147895,32148204-32148216,32148421-32148512,
32149078-32149164,32149254-32149328,32149630-32149680,
32149852-32149947,32150135-32150221,32150312-32150368,
32150475-32150600,32150709-32150949,32151028-32151114,
32151260-32151637,32152847-32153187
Length = 912
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -1
Query: 162 VESRQRSLSSYPNRRYGSWDQVHPDRTSISDTVYFCSTG 46
+ S + + S GSW H D +++ DT+ CS+G
Sbjct: 758 MNSSNQQIGSPSEEDLGSWGH-HSDPSTVPDTILQCSSG 795
>04_04_0044 - 22333376-22333898,22335509-22336227
Length = 413
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 337 LELIGSNWDAWCVWQASRYCSTCSHWTAHHVR 432
LEL GS W +W A+R T + HVR
Sbjct: 72 LELDGSCWGSWSEAAATRASGTATGGAGKHVR 103
>02_03_0106 + 15292869-15296138
Length = 1089
Score = 27.1 bits (57), Expect = 7.3
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = -3
Query: 289 LMRIWN*SFPQFFTRYLLQQIRPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSKI 116
L+ W+ +FP++ LL + R EL CS S C GK+ ++ +P+ +I
Sbjct: 1008 LIIFWSIAFPRWLE--LLIRKRDGLCHFELQCSLSLLRSCLDGGKNWSIVQQIPEVRI 1063
>02_03_0034 -
14142518-14142923,14142935-14143269,14143976-14144068,
14144704-14145674,14145714-14145812,14146011-14146488,
14146717-14146929
Length = 864
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 337 LELIGSNWDAWCVWQASRYCSTCSHWTA 420
++++G+NWDA QA R+ S WT+
Sbjct: 728 VQMLGTNWDAPGWTQAPRHSIGISTWTS 755
>09_06_0320 - 22297579-22297760,22298433-22299358,22299422-22299747,
22300591-22300660,22301632-22301726,22301917-22302048,
22302154-22302222,22302953-22303051,22303169-22303253,
22303353-22303453,22303660-22303728,22303861-22303901,
22304085-22304303,22304444-22304470,22304562-22304660,
22304898-22305106,22305382-22305485,22305753-22305894,
22305991-22306289,22306508-22306903
Length = 1229
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 377 GKPQGTVARVRIGQPIMSVRSID 445
G PQ T+ R+ +G P +S++S D
Sbjct: 1089 GTPQQTLERLHVGHPTLSLQSND 1111
>06_01_1092 +
8966584-8967053,8967737-8967854,8968030-8968253,
8968352-8968588,8969122-8969275,8969356-8969438,
8969573-8969687,8969837-8969909,8970005-8970147
Length = 538
Score = 26.6 bits (56), Expect = 9.6
Identities = 12/43 (27%), Positives = 27/43 (62%)
Frame = -3
Query: 193 SYSSDTKCTHSGKSSTVALFLPKSKIRILGSGTPRQNLDFGYG 65
S D + T++ +SS++ + L + ++++ + R+NLDF +G
Sbjct: 230 SKQCDYEITYADRSSSMGI-LARDNMQLITADGERENLDFVFG 271
>04_04_1108 + 30961600-30962013,30963131-30964465
Length = 582
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = -1
Query: 237 CSRYVLPPKPLSSAVHIRRTPSARTVESRQRSLSS 133
C + PP PL++ V + P+A + S + +++S
Sbjct: 103 CGAEIAPPPPLAAVVSVVAPPAAIPITSNRPAMTS 137
>01_07_0275 + 42434082-42435152
Length = 356
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 81 SISDTVYFCSTGSILLAGAPW 19
S SD V + S+LLAG PW
Sbjct: 132 SCSDIVTLAARDSVLLAGGPW 152
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,957,783
Number of Sequences: 37544
Number of extensions: 337699
Number of successful extensions: 1004
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -