Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31367
(775 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0233 + 14042548-14044950 30 1.8
02_05_1269 + 35352825-35352888,35353645-35353968,35355062-353551... 29 3.1
03_02_0147 - 5923117-5923215,5923882-5924069,5924885-5924977,592... 29 5.4
06_03_0052 - 16027570-16027617,16027789-16027795,16028103-160283... 28 7.2
03_06_0576 + 34832900-34832911,34833006-34833122,34833752-348338... 28 7.2
03_01_0648 - 4749150-4749275,4749902-4749986,4750761-4750861,475... 28 7.2
07_03_0167 - 14649782-14649864,14649954-14650078,14650357-146504... 28 9.5
01_05_0268 - 20251413-20251565,20252420-20252674,20252905-202530... 28 9.5
01_01_0968 - 7618357-7618529,7618891-7619094,7620896-7621139,762... 28 9.5
>01_03_0233 + 14042548-14044950
Length = 800
Score = 30.3 bits (65), Expect = 1.8
Identities = 24/85 (28%), Positives = 37/85 (43%)
Frame = -1
Query: 574 YPIAGNVKSFVPEDYGSNPIIPHGLSVVMTAPAVFRFTASSDPEKHLEAASLLGADVTNA 395
Y + NV +F + P P+ T P + R S + A G D A
Sbjct: 453 YEYSMNVLAFGIQSSDITPAFPYVAPFSCTVPDICRIVRSFIEDSVSFMAHGGGGDTYAA 512
Query: 394 KRKDAGRILSDVILLYMDKLKIENG 320
+K GRILS+V+ + KL +++G
Sbjct: 513 VKKYLGRILSEVVDASIQKL-VDSG 536
>02_05_1269 +
35352825-35352888,35353645-35353968,35355062-35355183,
35355361-35355482,35355651-35355755,35356402-35356765,
35357181-35357321,35357619-35359109
Length = 910
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/77 (24%), Positives = 30/77 (38%)
Frame = +3
Query: 534 SSGTKLLTFPAIGYASP*HKCTPAFPMPTPAIVAARCMLDLASTSPELFTERTKYFCXVC 713
SSG L+ PA+GY P H T +L L + P L ++
Sbjct: 686 SSGGVALSRPAVGYVDPRHLATGEMTPERDVYALGVVLLRLVTGKPPLMAKQEAR--EAA 743
Query: 714 KQNRAQHQIWDCCLDCW 764
++A H+++D W
Sbjct: 744 GGSKAWHEVFDASSGGW 760
>03_02_0147 -
5923117-5923215,5923882-5924069,5924885-5924977,
5925499-5925628,5925720-5925802,5925893-5925976,
5926253-5926316,5926375-5926515,5926801-5926863,
5926968-5927006,5927126-5927185,5927567-5927624,
5927708-5928099
Length = 497
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -1
Query: 679 NNSGDVEARS-SMHLAATMAGVGIGNAGVHLCHGLA 575
NN+ D+ A+ S ATM G+G+G H+ G A
Sbjct: 320 NNAADISAKEGSQETLATMLGMGLGMLLAHVTRGHA 355
>06_03_0052 -
16027570-16027617,16027789-16027795,16028103-16028341,
16028432-16028566,16028670-16028888
Length = 215
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -1
Query: 619 VGIGNAGVHLCHGLAYPIAGNVKSFVPEDYGSNPIIPHGLSVVMTAPAVF 470
VG + G + A AGN+K F+P D+G++ H +V A A F
Sbjct: 96 VGYHDVGEQMKIIAAIKEAGNIKRFIPSDFGNDADHAH---IVEPAKATF 142
>03_06_0576 +
34832900-34832911,34833006-34833122,34833752-34833810,
34833901-34833960,34834197-34834250,34834332-34834380,
34834493-34834540,34834889-34834954,34835591-34835641,
34835732-34835851,34835921-34836005,34836428-34836509,
34836666-34836774,34837005-34837051,34837131-34837188,
34839114-34839220,34839700-34839765,34839833-34839879,
34839977-34840042,34840146-34840243,34840344-34840469,
34840551-34840835,34840920-34840985,34841079-34841228
Length = 675
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = -1
Query: 370 LSDVIL-LYMDKLKIENGLKALGY--TNDDIPDLVKGALPQDRL 248
++D+ L LY + GLKALGY ND+ V G LP D L
Sbjct: 448 IADMCLELYKEYGTTMAGLKALGYEFDNDEFHANVHGTLPYDNL 491
>03_01_0648 -
4749150-4749275,4749902-4749986,4750761-4750861,
4750933-4751191,4751382-4751434,4752828-4752990,
4753181-4754616
Length = 740
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -1
Query: 622 GVGIGNAGVHLCHGLAYPIAGNVKSFVPEDYGSNPIIP 509
G G G G C+GL P + + P YG +P P
Sbjct: 39 GGGGGGGGAAQCYGLHGPTRYHAHAGAPARYGGDPCFP 76
>07_03_0167 -
14649782-14649864,14649954-14650078,14650357-14650400,
14650873-14651003,14652469-14652559,14653335-14653445,
14653623-14653774,14653863-14654067,14654436-14654764,
14654850-14655309
Length = 576
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -1
Query: 310 LGYTNDDIPDLVKGALPQD 254
LG+T D PDLVK LP D
Sbjct: 408 LGHTPQDHPDLVKSGLPGD 426
>01_05_0268 -
20251413-20251565,20252420-20252674,20252905-20253055,
20253161-20253398,20253966-20254067,20254382-20254611,
20255599-20255724,20256056-20256828
Length = 675
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = +3
Query: 315 FNPFSIFNLSIYKSMTSESILPASFLLALVTSAP---SRLAASRCFSGSLDAVNRKTAGA 485
F+ I N+ + + + I+ + +L +TS P R A+ F+G L + G
Sbjct: 123 FSDTDILNMDSVRRLNTSEIVHGALVLMNLTSEPMLPGRSTATANFTGFLKTMLTDVVGQ 182
Query: 486 VITTDRP*GIIGLE 527
V++T R I +E
Sbjct: 183 VLSTRRHYAAIRME 196
>01_01_0968 -
7618357-7618529,7618891-7619094,7620896-7621139,
7623008-7623151,7623272-7623487
Length = 326
Score = 27.9 bits (59), Expect = 9.5
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Frame = -1
Query: 670 GDVEARSSMHLAATMAGV---GIGNAGVHLCHGL-----AYPIAGNVKSFVPEDYG 527
GD+ R S+ A A V +G+ G G A AGNVK FVP +YG
Sbjct: 73 GDMNDRESLVAAIRQADVVISAVGHRGTVELDGQLKVVEAIKEAGNVKRFVPSEYG 128
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,515,527
Number of Sequences: 37544
Number of extensions: 334220
Number of successful extensions: 892
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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