Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31366
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    26   4.1  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    25   7.1  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   9.4  
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb...    25   9.4  
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    25   9.4  

>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 461 KWMIMHSLSKEQKRTFENISKILLSFFFVN 550
           ++++ H LS+  K   +NI KILL  F  N
Sbjct: 270 QYLLFHLLSRCGKHAVQNIHKILLPIFQKN 299


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 348 NESRDKLRGQQTYSYLIMR*RDCVTIQSTLSGLC 449
           NE+  ++ G+Q Y+   +R   C  +QS+ +G+C
Sbjct: 193 NETVAQVSGKQIYNTEKIRSNICDAVQSSRNGIC 226


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 83  SGGDAGNYNNMDAKNILKQRHLP 151
           +G D G+  N  AK + +Q H+P
Sbjct: 275 TGNDGGSPINRPAKRVKRQNHIP 297


>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 413 LRYDPVNVKRSLLIIIKWMIMHSLSKEQKRTF-ENISK 523
           L+YDP     SLL I K M MH +S   +R+  EN  K
Sbjct: 339 LQYDP----NSLLYISKAMDMHDMSASHQRSLSENRKK 372


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +3

Query: 24  LNLQVVALKWTRLELRHSCHLAATRGTTTIWT 119
           L  ++ +L+W  +   H+ H A   G    WT
Sbjct: 560 LKYEIASLRWIYISHMHADHHAGVIGVLKAWT 591


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,476,158
Number of Sequences: 5004
Number of extensions: 46294
Number of successful extensions: 89
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)