Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31362
(694 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0354 - 17104223-17106061,17106770-17106794,17107317-171075... 30 1.5
01_03_0233 + 14042548-14044950 30 1.5
06_01_0553 + 3942907-3943617 28 6.1
03_06_0576 + 34832900-34832911,34833006-34833122,34833752-348338... 28 6.1
09_02_0136 + 4747985-4748419 28 8.1
07_03_0167 - 14649782-14649864,14649954-14650078,14650357-146504... 28 8.1
07_03_0132 - 14011468-14012124 28 8.1
07_03_0131 - 14004278-14004712 28 8.1
01_05_0268 - 20251413-20251565,20252420-20252674,20252905-202530... 28 8.1
>10_08_0354 -
17104223-17106061,17106770-17106794,17107317-17107561,
17108432-17108677
Length = 784
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -1
Query: 670 RRGSEIEHASGGDDGGRRASETRGVHLCHGLAYPIAGNVKSFV 542
R G +H GG DGG + E G+++C G P A V +
Sbjct: 704 RMGRSAKH--GGVDGGGESWEAEGLYVCDGSLLPTAVGVNPMI 744
>01_03_0233 + 14042548-14044950
Length = 800
Score = 30.3 bits (65), Expect = 1.5
Identities = 24/85 (28%), Positives = 37/85 (43%)
Frame = -1
Query: 574 YPIAGNVKSFVPEDYGSNPIIPHGLSVVMTAPAVFRFTASSDPEKHLEAASLLGADVTNA 395
Y + NV +F + P P+ T P + R S + A G D A
Sbjct: 453 YEYSMNVLAFGIQSSDITPAFPYVAPFSCTVPDICRIVRSFIEDSVSFMAHGGGGDTYAA 512
Query: 394 KRKDAGRILSDVILLYMDKLKIENG 320
+K GRILS+V+ + KL +++G
Sbjct: 513 VKKYLGRILSEVVDASIQKL-VDSG 536
>06_01_0553 + 3942907-3943617
Length = 236
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -1
Query: 649 HASGGDDGGRRASETRGVHLCHGLAYPIAGN-VKSFVPEDYGSNP 518
H+SGG GG+R T G + A P A + + + + +NP
Sbjct: 161 HSSGGGGGGKRTRTTNGAATTYKAAAPAAASAAAAAITGCFAANP 205
>03_06_0576 +
34832900-34832911,34833006-34833122,34833752-34833810,
34833901-34833960,34834197-34834250,34834332-34834380,
34834493-34834540,34834889-34834954,34835591-34835641,
34835732-34835851,34835921-34836005,34836428-34836509,
34836666-34836774,34837005-34837051,34837131-34837188,
34839114-34839220,34839700-34839765,34839833-34839879,
34839977-34840042,34840146-34840243,34840344-34840469,
34840551-34840835,34840920-34840985,34841079-34841228
Length = 675
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = -1
Query: 370 LSDVIL-LYMDKLKIENGLKALGY--TNDDIPDLVKGALPQDRL 248
++D+ L LY + GLKALGY ND+ V G LP D L
Sbjct: 448 IADMCLELYKEYGTTMAGLKALGYEFDNDEFHANVHGTLPYDNL 491
>09_02_0136 + 4747985-4748419
Length = 144
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = -1
Query: 670 RRGSEIEHASGGDDGGRRASETRGVH 593
R G E +SGG G RRAS RG H
Sbjct: 69 REGRRRERSSGGLRGKRRASRGRGGH 94
>07_03_0167 -
14649782-14649864,14649954-14650078,14650357-14650400,
14650873-14651003,14652469-14652559,14653335-14653445,
14653623-14653774,14653863-14654067,14654436-14654764,
14654850-14655309
Length = 576
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -1
Query: 310 LGYTNDDIPDLVKGALPQD 254
LG+T D PDLVK LP D
Sbjct: 408 LGHTPQDHPDLVKSGLPGD 426
>07_03_0132 - 14011468-14012124
Length = 218
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = -1
Query: 670 RRGSEIEHASGGDDGGRRASETRGVH 593
R G E +SGG G RRAS RG H
Sbjct: 69 REGRRRERSSGGLRGKRRASRGRGGH 94
>07_03_0131 - 14004278-14004712
Length = 144
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = -1
Query: 670 RRGSEIEHASGGDDGGRRASETRGVH 593
R G E +SGG G RRAS RG H
Sbjct: 69 REGRRRERSSGGLRGKRRASRGRGGH 94
>01_05_0268 -
20251413-20251565,20252420-20252674,20252905-20253055,
20253161-20253398,20253966-20254067,20254382-20254611,
20255599-20255724,20256056-20256828
Length = 675
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = +3
Query: 315 FNPFSIFNLSIYKSMTSESILPASFLLALVTSAP---SRLAASRCFSGSLDAVNRKTAGA 485
F+ I N+ + + + I+ + +L +TS P R A+ F+G L + G
Sbjct: 123 FSDTDILNMDSVRRLNTSEIVHGALVLMNLTSEPMLPGRSTATANFTGFLKTMLTDVVGQ 182
Query: 486 VITTDRP*GIIGLE 527
V++T R I +E
Sbjct: 183 VLSTRRHYAAIRME 196
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,151,967
Number of Sequences: 37544
Number of extensions: 316581
Number of successful extensions: 938
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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