Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31360
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    28   1.1  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   1.9  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    27   2.5  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    26   4.4  
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc...    26   5.8  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    26   5.8  
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    25   7.7  
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    25   7.7  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    25   7.7  

>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/32 (50%), Positives = 17/32 (53%)
 Frame = +3

Query: 243 LHRFKLPDDIRELLRAKNASIRAYDRYPTAEN 338
           L+RF  P DIR L R  N S R  D  P A N
Sbjct: 809 LNRFNRPPDIRRLKRLVNFSFRTQD--PEASN 838


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 461 SYSQIGYGSNYAPPRRPLKPTRG 529
           SYSQ  Y     PP+ P  P+RG
Sbjct: 96  SYSQPSYSQPSQPPKEPALPSRG 118


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 258 LPDDIRELLRAKNASIRAYDRY 323
           LP D+R+++   N+ IR YD Y
Sbjct: 619 LPLDVRQIIGLANSIIRGYDNY 640


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 464 YSQIGYGSNYAPPRRPLKPTRG 529
           YS+ GY     PPR  L P++G
Sbjct: 898 YSRGGYSRGSVPPRETLAPSKG 919


>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 645 VLPHCLLILHEQGPRIECW 589
           ++P C + L+E+GPR+  W
Sbjct: 22  LIPKCTIDLYEKGPRLGGW 40


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 597 QSVDPVHVELVDSEVERRASLPPSDALP 680
           +S+ P H+  +D  + R  S+  S+ALP
Sbjct: 628 KSLPPKHLPSLDETISREMSIASSEALP 655


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 513 SSRLAAFDDDEKAELLAD 566
           S +LA+FDDDE+A +  D
Sbjct: 450 SEKLASFDDDEEARVSRD 467


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +3

Query: 264 DDIRELLRAKNASIRAYDRYPTAENRIRMRALQRDVKSRITEVRDAR 404
           D+    + A+    RA+DR  TAE   R+ + + D   ++  ++DA+
Sbjct: 342 DEFFSSIEAQKLKKRAHDRLATAER--RLESAKEDQARKLQSLQDAQ 386


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 46  PFPSRGLLWIGTRWASAWLNLIHHRFRLVRTLSRLLRIPLKP 171
           P+P+  L  +   W   WL +    F + R ++RLL   L P
Sbjct: 90  PYPNAKLGGVRIFWIFVWLEVAWGGFWVSRVIARLLPYILYP 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,585,597
Number of Sequences: 5004
Number of extensions: 48699
Number of successful extensions: 136
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)