Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31360
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1160 + 9242541-9242825                                           36   0.040
12_01_0797 + 7300370-7300506,7300682-7300798,7301903-7302443,730...    31   0.85 
02_04_0213 + 20974712-20975413                                         30   1.5  
05_01_0313 - 2461487-2461861,2461929-2462513,2462819-2464154,246...    30   2.0  
03_06_0614 - 35099225-35099461,35099545-35099694,35099919-351000...    29   4.5  
11_01_0020 + 140220-140312,141282-141665                               28   7.9  
03_05_0549 - 25444234-25446792                                         28   7.9  
01_06_1154 - 34955235-34955827,34955912-34956045,34956142-349563...    28   7.9  

>01_01_1160 + 9242541-9242825
          Length = 94

 Score = 35.5 bits (78), Expect = 0.040
 Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +3

Query: 489 TMPPLVGPSSRLAAFDDDEKAELLADTLQTQCTPSTQS-VDPVHVELVDSEVERRASLPP 665
           T  P + P +  AA D+  KA  +AD ++   TPS+ S VDP   E V +   RRAS   
Sbjct: 6   TSKPALFPDAANAAIDEAVKA--VADAVRNSFTPSSGSDVDPTTGEAVAAAAARRASKAA 63

Query: 666 SDAL 677
            D L
Sbjct: 64  HDTL 67


>12_01_0797 +
           7300370-7300506,7300682-7300798,7301903-7302443,
           7302885-7304042,7304133-7304291,7304397-7304504,
           7305045-7305304,7305936-7306101,7307025-7307050,
           7307318-7307402,7307486-7307695,7308815-7308872,
           7308964-7309037,7309323-7309373,7309576-7309664,
           7310027-7310104,7310164-7310269
          Length = 1140

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +1

Query: 16  SL*SSVALPIPFPSRGLLWIGTRWASAWLNLIHHRFRLVRT 138
           SL SS+   +P  + GLL +GTR +S+W    H   + +R+
Sbjct: 798 SLPSSIRRALPVAAHGLLELGTRTSSSWHRSNHSENKYLRS 838


>02_04_0213 + 20974712-20975413
          Length = 233

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 27/90 (30%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
 Frame = +3

Query: 288 AKNASIRAYDRYPTAENRIRMRAL---QRDVKSRITEVRDARWSDFLXRLAPSQRSYYRL 458
           A  A + A  R    E   RM  L    RD ++   E  D  W DF   L        +L
Sbjct: 62  AATAPVAAARRVDEEEEEERMDQLWERDRDARAGDEERMDLLWEDFNDELL------LQL 115

Query: 459 ARTLKSDTVVTMPPLVGPSSRLAAFDDDEK 548
            R  +       PP   PS   AA DDD++
Sbjct: 116 RRRQQQRAAAGTPPSPSPSPAAAADDDDDE 145


>05_01_0313 -
           2461487-2461861,2461929-2462513,2462819-2464154,
           2464231-2464338,2464421-2464743
          Length = 908

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 238 TSFTASNCPTILGNSLELRTPRSVRTIGILPRKIVFECVPYN 363
           T + AS C   +G +LE  +P    T  +LPR   FE +P++
Sbjct: 341 TDYLASECA--IGINLERTSPPEETTYVLLPRAAYFEFIPFD 380


>03_06_0614 -
           35099225-35099461,35099545-35099694,35099919-35100066,
           35100152-35100231,35100428-35100594,35100692-35100940,
           35101025-35102310,35102423-35102544,35102946-35103272
          Length = 921

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -1

Query: 98  QADAQRVPIHNSPRDGNG-IGSATELHNDGT 9
           Q   + +P+H  PRDG G  G   E H+ GT
Sbjct: 212 QCKEEPLPLHEPPRDGGGSAGEEEEEHDVGT 242


>11_01_0020 + 140220-140312,141282-141665
          Length = 158

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +3

Query: 504 VGPSSRLAAFDDDEKAELLADTLQTQCTPS--TQSVDPVHVELVDSEVE 644
           +G       F+D+EK EL+ D+      PS     +DPV  E VD +V+
Sbjct: 12  IGEEEEALVFEDEEKTELIRDSYLQLTGPSRAVLLIDPVTFE-VDLKVK 59


>03_05_0549 - 25444234-25446792
          Length = 852

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 8/102 (7%)
 Frame = +3

Query: 402 RWSDFLXRLAPSQRSYYRLARTLKS--DTVVTMPPLVGPSSRLAAFDDDEKA------EL 557
           R+   + ++A + R    L R L+   DT V M   +G    LA  +DD+ A       L
Sbjct: 286 RFDANVKQMADNGRLQPLLTRLLRGEPDTRVAMADYLG---ELALANDDKAAVAEQAGPL 342

Query: 558 LADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPPSDALPP 683
           L   L+T  TP+ ++      E+  SE   +  L  +  LPP
Sbjct: 343 LVGMLRTGATPAKEATLKALREISSSEASAKLLLQRAGVLPP 384


>01_06_1154 -
           34955235-34955827,34955912-34956045,34956142-34956389,
           34956431-34956901
          Length = 481

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +3

Query: 342 IRMRALQRDVKSRITEVRDARWSDFLXRLAPSQRSYYRLARTLK 473
           +R++AL  + +SR+ +  +  + DF+  L P  R Y R+   +K
Sbjct: 182 LRLKALNGE-RSRLAQSFEYNYGDFIPILRPFLRGYLRICEEVK 224


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,578,568
Number of Sequences: 37544
Number of extensions: 382710
Number of successful extensions: 962
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)