Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31359
(480 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1003 - 7939376-7939414,7939464-7939568,7939757-7939872,794... 29 2.6
08_01_0876 - 8598664-8599374 28 3.4
05_04_0126 + 18252594-18256922 28 3.4
01_06_1303 - 36132588-36132710,36133879-36134103,36134318-361347... 28 3.4
12_01_0046 - 373974-374188,374298-374580,374698-374764,375705-37... 27 6.0
11_06_0338 + 22479804-22480651,22480764-22482954 27 6.0
06_03_1343 - 29463880-29464054,29464460-29464611,29464734-294648... 27 6.0
06_03_0479 - 21289903-21290124,21290207-21290342,21290435-212904... 27 7.9
03_02_0915 + 12360079-12360095,12360225-12361353 27 7.9
03_02_0463 - 8673313-8673639,8674040-8674126,8674710-8674790,867... 27 7.9
>01_01_1003 -
7939376-7939414,7939464-7939568,7939757-7939872,
7941494-7942760
Length = 508
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 231 RVMRLWSM*VALKYGISNWNTGISYCE 151
R R W++ AL GISNW+ I+ E
Sbjct: 409 RFTRAWTLPRALSSGISNWSNAINLAE 435
>08_01_0876 - 8598664-8599374
Length = 236
Score = 28.3 bits (60), Expect = 3.4
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Frame = +3
Query: 60 STGPASWTITNASPT---TWPRTRNVSRAEGRSPR----STRYRC 173
++GP WT+ A+P T P++R R RSPR + R RC
Sbjct: 152 ASGPRRWTMDGAAPLLPETSPKSRRGRRGGRRSPRRGPRTRRRRC 196
>05_04_0126 + 18252594-18256922
Length = 1442
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 338 LAQHMSFKEDVVLSLYINGSYPLIRLTTVFDKGNN 442
L H+ V+ SL I+G ++RL T+F KG+N
Sbjct: 1031 LYNHLIQPPKVLESLSIDGPTKIVRLLTMFAKGSN 1065
>01_06_1303 -
36132588-36132710,36133879-36134103,36134318-36134713,
36135352-36135547,36135591-36135740,36135818-36135924,
36135987-36136094,36136354-36136435,36136436-36136536,
36136778-36136996,36137455-36137583,36137665-36137742,
36137816-36137929,36138071-36138230,36139224-36139441
Length = 801
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +2
Query: 203 TYIDHNLITRNHDKCRVSEFYDNVRTLKTVLTVDCPWLNFESN 331
TY+ +I NH R+ EF + L ++C W+ N
Sbjct: 139 TYVIPGIINYNHS--RIDEFIKKAQDLLDPTVLECAWMELSEN 179
>12_01_0046 -
373974-374188,374298-374580,374698-374764,375705-375889
Length = 249
Score = 27.5 bits (58), Expect = 6.0
Identities = 9/34 (26%), Positives = 17/34 (50%)
Frame = -2
Query: 170 PVSRTARGSALCTGYISSSRPGGRRCICNRPRSR 69
P+ + + A C G++ P GR+ +C + R
Sbjct: 181 PLGQYRKSCAFCRGHLDILHPMGRKFVCGNDKDR 214
>11_06_0338 + 22479804-22480651,22480764-22482954
Length = 1012
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 302 DCPWLNFESNRTLAQHMSFKEDVVLSLY 385
DCP ++ N+ + H S+ DVV+SLY
Sbjct: 65 DCPGVDLIDNQ-IQYHWSYYRDVVISLY 91
>06_03_1343 -
29463880-29464054,29464460-29464611,29464734-29464889,
29465010-29465316,29465411-29465527,29465600-29465934
Length = 413
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = -1
Query: 216 WSM*VALKYGISNWNTGISYCEGICPLHGIHFEFAA 109
W L+YG+ WN G+ G C L G + A
Sbjct: 219 WLTSAMLQYGLETWNLGVICLIGNCFLMGAYLVIQA 254
>06_03_0479 -
21289903-21290124,21290207-21290342,21290435-21290490,
21290734-21290811,21290902-21290988,21291067-21291127,
21291220-21291308,21291448-21291545,21291655-21291754,
21293968-21294030
Length = 329
Score = 27.1 bits (57), Expect = 7.9
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +1
Query: 37 FCRAAESDLQALLLGRLQMHLRPPGRELEMYPVQRADPLAVRD 165
FC A S LL H+ PPG EL PV + P+A D
Sbjct: 64 FCPEASS---LLLHNFCIYHISPPGHELGAAPVSPSSPVASVD 103
>03_02_0915 + 12360079-12360095,12360225-12361353
Length = 381
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +2
Query: 71 CFLDDY--KCISDHLAANSKCIPCRGQIPSQYEIP 169
C D + +CI DH+AA S+C C Q + IP
Sbjct: 190 CCFDSFCDRCIRDHIAAKSRC-ACGAQARAGDLIP 223
>03_02_0463 -
8673313-8673639,8674040-8674126,8674710-8674790,
8674896-8675048,8675129-8675185,8675293-8675569,
8675634-8675749,8676372-8676523,8676627-8676816,
8676935-8677345
Length = 616
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 155 ARGSALCTGYISSSRPGGRRCICNRPRSRACRSDSAA 45
AR + G +SR GG RC +P + A + SAA
Sbjct: 30 ARAAVAAGGRRRTSRRGGVRCSAGKPEASAVINGSAA 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,697,364
Number of Sequences: 37544
Number of extensions: 253967
Number of successful extensions: 739
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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