Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31359
(480 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L14837-1|AAA02891.1| 1736|Homo sapiens tight junction (zonula oc... 30 4.8
DQ015919-1|AAY22179.1| 1748|Homo sapiens tight junction protein ... 30 4.8
BC111712-1|AAI11713.1| 1748|Homo sapiens tight junction protein ... 30 4.8
AK123755-1|BAC85688.1| 258|Homo sapiens rCS1a) mRNA. protein. 29 6.4
M57707-1|AAA63254.1| 454|Homo sapiens retinoic acid receptor-ga... 29 8.5
M38258-1|AAA60254.1| 454|Homo sapiens retinoic acid receptor-ga... 29 8.5
M24857-1|AAA52692.1| 454|Homo sapiens RARG protein. 29 8.5
BC130632-1|AAI30633.1| 1314|Homo sapiens ring finger protein 123... 29 8.5
BC093729-1|AAH93729.1| 454|Homo sapiens retinoic acid receptor,... 29 8.5
BC093727-1|AAH93727.1| 454|Homo sapiens retinoic acid receptor,... 29 8.5
BC088801-1|AAH88801.1| 782|Homo sapiens RNF123 protein protein. 29 8.5
BC057392-1|AAH57392.2| 925|Homo sapiens RNF123 protein protein. 29 8.5
BC041145-1|AAH41145.1| 873|Homo sapiens RNF123 protein protein. 29 8.5
AY744152-1|AAU93470.1| 1314|Homo sapiens ubiquitin ligase protein. 29 8.5
AL122075-1|CAB59250.1| 525|Homo sapiens hypothetical protein pr... 29 8.5
AK022627-1|BAB14139.1| 622|Homo sapiens protein ( Homo sapiens ... 29 8.5
AJ250835-1|CAB60726.1| 381|Homo sapiens retinoic acid receptor ... 29 8.5
AF094516-1|AAC69630.1| 703|Homo sapiens E1-like protein protein. 29 8.5
>L14837-1|AAA02891.1| 1736|Homo sapiens tight junction (zonula
occludens) protein ZO-1 protein.
Length = 1736
Score = 29.9 bits (64), Expect = 4.8
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 75 SWTITNASPTTWPRTRNVSRAEGRSPRSTRYRCSS 179
S + S WPR R+ SR SPRS R +S
Sbjct: 132 SGVVNRRSEKIWPRDRSASRERSLSPRSDRRSVAS 166
>DQ015919-1|AAY22179.1| 1748|Homo sapiens tight junction protein 1
(zona occludens 1) protein.
Length = 1748
Score = 29.9 bits (64), Expect = 4.8
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 75 SWTITNASPTTWPRTRNVSRAEGRSPRSTRYRCSS 179
S + S WPR R+ SR SPRS R +S
Sbjct: 144 SGVVNRRSEKIWPRDRSASRERSLSPRSDRRSVAS 178
>BC111712-1|AAI11713.1| 1748|Homo sapiens tight junction protein 1
(zona occludens 1) protein.
Length = 1748
Score = 29.9 bits (64), Expect = 4.8
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 75 SWTITNASPTTWPRTRNVSRAEGRSPRSTRYRCSS 179
S + S WPR R+ SR SPRS R +S
Sbjct: 144 SGVVNRRSEKIWPRDRSASRERSLSPRSDRRSVAS 178
>AK123755-1|BAC85688.1| 258|Homo sapiens rCS1a) mRNA. protein.
Length = 258
Score = 29.5 bits (63), Expect = 6.4
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = +3
Query: 45 GRRVRSTGPASWTITNASPTTWPRTRNVSRAEGRSPRSTRY 167
GR R T PA T SP T R + SR R P + RY
Sbjct: 107 GRASRPTSPAESTAPPRSPRTSSRVGSGSRVGTRGPLAHRY 147
>M57707-1|AAA63254.1| 454|Homo sapiens retinoic acid receptor-gamma
protein.
Length = 454
Score = 29.1 bits (62), Expect = 8.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 47 PPSPIYRPCFLDDYKCISDHLAANSKCIPCRG 142
PP +Y+PCF+ + K H +S C C+G
Sbjct: 82 PPPRVYKPCFVCNDKSSGYHYGVSS-CEGCKG 112
>M38258-1|AAA60254.1| 454|Homo sapiens retinoic acid
receptor-gamma-1 protein.
Length = 454
Score = 29.1 bits (62), Expect = 8.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 47 PPSPIYRPCFLDDYKCISDHLAANSKCIPCRG 142
PP +Y+PCF+ + K H +S C C+G
Sbjct: 82 PPPRVYKPCFVCNDKSSGYHYGVSS-CEGCKG 112
>M24857-1|AAA52692.1| 454|Homo sapiens RARG protein.
Length = 454
Score = 29.1 bits (62), Expect = 8.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 47 PPSPIYRPCFLDDYKCISDHLAANSKCIPCRG 142
PP +Y+PCF+ + K H +S C C+G
Sbjct: 82 PPPRVYKPCFVCNDKSSGYHYGVSS-CEGCKG 112
>BC130632-1|AAI30633.1| 1314|Homo sapiens ring finger protein 123
protein.
Length = 1314
Score = 29.1 bits (62), Expect = 8.5
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +2
Query: 47 PPSPIYRPCFLDDYK-CISDHLAANSKCIPCRGQIPS 154
P S +++PC K CI+ HL N C C+ I S
Sbjct: 1261 PISAVFQPCGHKSCKACINQHLMNNKDCFFCKTTIVS 1297
>BC093729-1|AAH93729.1| 454|Homo sapiens retinoic acid receptor,
gamma protein.
Length = 454
Score = 29.1 bits (62), Expect = 8.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 47 PPSPIYRPCFLDDYKCISDHLAANSKCIPCRG 142
PP +Y+PCF+ + K H +S C C+G
Sbjct: 82 PPPRVYKPCFVCNDKSSGYHYGVSS-CEGCKG 112
>BC093727-1|AAH93727.1| 454|Homo sapiens retinoic acid receptor,
gamma protein.
Length = 454
Score = 29.1 bits (62), Expect = 8.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 47 PPSPIYRPCFLDDYKCISDHLAANSKCIPCRG 142
PP +Y+PCF+ + K H +S C C+G
Sbjct: 82 PPPRVYKPCFVCNDKSSGYHYGVSS-CEGCKG 112
>BC088801-1|AAH88801.1| 782|Homo sapiens RNF123 protein protein.
Length = 782
Score = 29.1 bits (62), Expect = 8.5
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +2
Query: 47 PPSPIYRPCFLDDYK-CISDHLAANSKCIPCRGQIPS 154
P S +++PC K CI+ HL N C C+ I S
Sbjct: 729 PISAVFQPCGHKSCKACINQHLMNNKDCFFCKTTIVS 765
>BC057392-1|AAH57392.2| 925|Homo sapiens RNF123 protein protein.
Length = 925
Score = 29.1 bits (62), Expect = 8.5
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +2
Query: 47 PPSPIYRPCFLDDYK-CISDHLAANSKCIPCRGQIPS 154
P S +++PC K CI+ HL N C C+ I S
Sbjct: 872 PISAVFQPCGHKSCKACINQHLMNNKDCFFCKTTIVS 908
>BC041145-1|AAH41145.1| 873|Homo sapiens RNF123 protein protein.
Length = 873
Score = 29.1 bits (62), Expect = 8.5
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +2
Query: 47 PPSPIYRPCFLDDYK-CISDHLAANSKCIPCRGQIPS 154
P S +++PC K CI+ HL N C C+ I S
Sbjct: 820 PISAVFQPCGHKSCKACINQHLMNNKDCFFCKTTIVS 856
>AY744152-1|AAU93470.1| 1314|Homo sapiens ubiquitin ligase protein.
Length = 1314
Score = 29.1 bits (62), Expect = 8.5
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +2
Query: 47 PPSPIYRPCFLDDYK-CISDHLAANSKCIPCRGQIPS 154
P S +++PC K CI+ HL N C C+ I S
Sbjct: 1261 PISAVFQPCGHKSCKACINQHLMNNKDCFFCKTTIVS 1297
>AL122075-1|CAB59250.1| 525|Homo sapiens hypothetical protein
protein.
Length = 525
Score = 29.1 bits (62), Expect = 8.5
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Frame = +2
Query: 74 FLDDYKCISDHLAANSKCIPCRGQIPSQYEIPVFQFEIPYFNATYI---DHNLITRNHDK 244
FL + + A KC C ++ QYE F F FN+++ D +T H +
Sbjct: 451 FLSRFDNVLPVSLAFDKCTACSSKVLDQYEREGFNFLAKVFNSSHSFLEDLTGLTLLHQE 510
Query: 245 CRVSEFYD 268
+ +E +D
Sbjct: 511 TQAAEIWD 518
>AK022627-1|BAB14139.1| 622|Homo sapiens protein ( Homo sapiens
cDNA FLJ12565 fis, clone NT2RM4000848. ).
Length = 622
Score = 29.1 bits (62), Expect = 8.5
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +2
Query: 47 PPSPIYRPCFLDDYK-CISDHLAANSKCIPCRGQIPS 154
P S +++PC K CI+ HL N C C+ I S
Sbjct: 569 PISAVFQPCGHKSCKACINQHLMNNKDCFFCKTTIVS 605
>AJ250835-1|CAB60726.1| 381|Homo sapiens retinoic acid receptor
protein.
Length = 381
Score = 29.1 bits (62), Expect = 8.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 47 PPSPIYRPCFLDDYKCISDHLAANSKCIPCRG 142
PP +Y+PCF+ + K H +S C C+G
Sbjct: 9 PPPRVYKPCFVCNDKSSGYHYGVSS-CEGCKG 39
>AF094516-1|AAC69630.1| 703|Homo sapiens E1-like protein protein.
Length = 703
Score = 29.1 bits (62), Expect = 8.5
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Frame = +2
Query: 74 FLDDYKCISDHLAANSKCIPCRGQIPSQYEIPVFQFEIPYFNATYI---DHNLITRNHDK 244
FL + + A KC C ++ QYE F F FN+++ D +T H +
Sbjct: 629 FLSRFDNVLPVSLAFDKCTACSSKVLDQYEREGFNFLAKVFNSSHSFLEDLTGLTLLHQE 688
Query: 245 CRVSEFYD 268
+ +E +D
Sbjct: 689 TQAAEIWD 696
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,543,459
Number of Sequences: 237096
Number of extensions: 1383654
Number of successful extensions: 3253
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 3097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3253
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4270724850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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