Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31359
         (480 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084158-16|AAK68571.2|  347|Caenorhabditis elegans Hypothetical...    29   1.7  
U41273-2|AAA82454.2|  306|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z82068-2|CAB04898.2|  233|Caenorhabditis elegans Hypothetical pr...    28   3.1  
Z66561-3|CAA91455.1|  422|Caenorhabditis elegans Hypothetical pr...    28   3.1  
Z81086-3|CAD56586.1|  711|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical pr...    27   5.3  
AL132877-11|CAB60853.1|  214|Caenorhabditis elegans Hypothetical...    27   9.3  
AF125964-5|AAP13765.1|  722|Caenorhabditis elegans Hypothetical ...    27   9.3  
AF125964-2|AAD14754.1|  726|Caenorhabditis elegans Hypothetical ...    27   9.3  

>AC084158-16|AAK68571.2|  347|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.26 protein.
          Length = 347

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 179 TGTPVSRTARGSALCTGYISSSRPGGRRCI 90
           + TP S+T+   A+C G  SSSR G   CI
Sbjct: 10  SSTPSSQTSELCAVCGGKASSSRYGALSCI 39


>U41273-2|AAA82454.2|  306|Caenorhabditis elegans Hypothetical
           protein C26B9.6 protein.
          Length = 306

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 86  YKCISDHLAANSKCIPCRGQI-PSQYEIPV 172
           Y C+  + A  + C  CRG+I PS + +P+
Sbjct: 129 YVCLKSNFAMGNDCPVCRGKISPSLFSMPI 158


>Z82068-2|CAB04898.2|  233|Caenorhabditis elegans Hypothetical
           protein W04A4.4 protein.
          Length = 233

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 233 NHDKCRVSEFYDNVRTLKTVLTVDCPWLNFESNR 334
           N+D+ RV EF    R  K +LTV  P +  ES +
Sbjct: 88  NNDENRVWEFIQENRNSKFILTVSTPTIEEESEK 121


>Z66561-3|CAA91455.1|  422|Caenorhabditis elegans Hypothetical
           protein F08G12.3 protein.
          Length = 422

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 21/82 (25%), Positives = 36/82 (43%)
 Frame = +2

Query: 206 YIDHNLITRNHDKCRVSEFYDNVRTLKTVLTVDCPWLNFESNRTLAQHMSFKEDVVLSLY 385
           Y D N+ TRN +     E++ N++ L+ + T     +N  S +   + +  +   V +L 
Sbjct: 72  YYDENIRTRNEEIDGAIEYHRNIQPLEHISTCILNHINQFSMQEKMEWLHDRPKAVETLQ 131

Query: 386 INGSYPLIRLTTVFDKGNNFDL 451
              +  L  LT V D    F L
Sbjct: 132 QRSTVLLHELTNVDDFSRLFGL 153


>Z81086-3|CAD56586.1|  711|Caenorhabditis elegans Hypothetical
           protein F53B6.2b protein.
          Length = 711

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -2

Query: 128 YISSSRPGGRRC-ICNRPRS-RACRSD 54
           +ISS RP GR C    RP S RAC +D
Sbjct: 628 WISSGRPAGRNCEQMRRPHSARACVAD 654


>Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical protein
            F53B6.2a protein.
          Length = 1045

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -2

Query: 128  YISSSRPGGRRC-ICNRPRS-RACRSD 54
            +ISS RP GR C    RP S RAC +D
Sbjct: 962  WISSGRPAGRNCEQMRRPHSARACVAD 988


>AL132877-11|CAB60853.1|  214|Caenorhabditis elegans Hypothetical
           protein Y105E8B.5 protein.
          Length = 214

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 131 PCRGQIPSQYEIPVFQFEIP 190
           P R  IP  +E+PV  F+IP
Sbjct: 3   PTRAVIPDDFELPVDAFDIP 22


>AF125964-5|AAP13765.1|  722|Caenorhabditis elegans Hypothetical
           protein W03G1.6b protein.
          Length = 722

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 48  RRVRSTGPASWTITNASPTTWPRTRNVSRAEGRSPRS 158
           +R RS+  AS  +   SP +     + + A+GR+PRS
Sbjct: 555 QRARSSDRASIGMPPGSPVSIGSAHSANNADGRTPRS 591


>AF125964-2|AAD14754.1|  726|Caenorhabditis elegans Hypothetical
           protein W03G1.6a protein.
          Length = 726

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 48  RRVRSTGPASWTITNASPTTWPRTRNVSRAEGRSPRS 158
           +R RS+  AS  +   SP +     + + A+GR+PRS
Sbjct: 555 QRARSSDRASIGMPPGSPVSIGSAHSANNADGRTPRS 591


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,670,835
Number of Sequences: 27780
Number of extensions: 214313
Number of successful extensions: 563
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)