Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31351
         (465 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               26   0.23 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    24   0.93 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   1.6  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    23   2.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   2.8  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   6.5  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   6.5  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    21   6.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   8.6  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 25.8 bits (54), Expect = 0.23
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 341 LWQPSSPLKR*QPITRRLPTLTLSVETRWLXPLEKLYW 454
           L QP  P+K  +     L + T +++TR + P + L W
Sbjct: 436 LMQPKQPIKLFEQWKSILESGTTTLQTRTMHPYDHLVW 473


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 0.93
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = -1

Query: 297 LHAVRLEAPKMISSTTEACL-YXISYIQATILLDQLLSFLQVSLRELHDSTSTLNGFRKE 121
           L  + ++AP  ISS TE+ L   I  +    +LD  +S  ++ + E  D+TS ++  +K+
Sbjct: 330 LQELHVDAPTWISSVTESVLKSKIGQVFLITILDSKVS-ARIEMNE-DDNTSLVSLDKKQ 387


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = -1

Query: 204 LDQLLSFLQVSLRELHDSTSTLNGFRKECR 115
           LD  L  LQ  L E    TST       CR
Sbjct: 73  LDTFLRELQADLAEASQPTSTTTSVTPSCR 102


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 285 RLEAPKMISSTTEACLYXISY 223
           R + PK+ISS + +C Y  +Y
Sbjct: 297 RSKEPKIISSLSNSCNYSNNY 317


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = +2

Query: 41  SASALTNMSTNLTS 82
           SAS +TN++TNLT+
Sbjct: 952 SASNVTNVTTNLTT 965


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 65  TYLSVLMHSPVHEQDP 18
           T+L VL+H  +H+  P
Sbjct: 126 TFLRVLLHLAMHDYPP 141


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 325 IGNGFPLAAVVTTKEI 372
           +GN   +AAV+TT+ +
Sbjct: 53  VGNTLVIAAVITTRRL 68


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 65  TYLSVLMHSPVHEQDP 18
           T+L VL+H  +H+  P
Sbjct: 94  TFLRVLLHLAMHDYPP 109


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 7/28 (25%), Positives = 17/28 (60%)
 Frame = -1

Query: 207 LLDQLLSFLQVSLRELHDSTSTLNGFRK 124
           ++  + SF+++SLR + D  + ++   K
Sbjct: 830 MISSVKSFMELSLRSVKDRETIISAAEK 857


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,301
Number of Sequences: 438
Number of extensions: 2617
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12436029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)