Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31348
         (533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   109   3e-25
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    26   3.1  
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    26   4.1  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   5.4  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  109 bits (262), Expect = 3e-25
 Identities = 65/172 (37%), Positives = 84/172 (48%), Gaps = 4/172 (2%)
 Frame = +2

Query: 26  ILFLVFD--QGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXX 193
           IL+L+F    GIIG+    +IR EL  PGS  L G+ Q+YN  ++AH             
Sbjct: 22  ILYLLFGLVSGIIGSVFSFIIRMELSAPGSQFLSGNGQLYNVAISAHGILMIFFFIIPAL 81

Query: 194 XXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSS 373
                N LVPL++GAPD+A+PR+NN  F              + E G G G TVYPPLSS
Sbjct: 82  FGAFGNYLVPLMIGAPDVAYPRVNNFTFWLLPPALMLLLISALTEEGPGGGWTVYPPLSS 141

Query: 374 NIAHRGRSVDLAIFSLHLAXISSXXXXXXXXXXXXXXXXXXXSFDQLPLILY 529
             +H G ++DLAI SL L  ISS                   S  Q+PL  +
Sbjct: 142 ITSHSGPAIDLAILSLQLTGISSTLGSVNLIATMINMRAPGLSLYQMPLFAW 193



 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 1  NHKDIGTLYFIFGI*SGNNWNIF 69
          N KDI  LY +FG+ SG   ++F
Sbjct: 16 NAKDIAILYLLFGLVSGIIGSVF 38


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 9/40 (22%)
 Frame = -1

Query: 101 DFLIQLELKVLKMFQL---------FPDQIPKIKYNVPIS 9
           DFLIQL+ KV   FQL           + +P + +NVP S
Sbjct: 609 DFLIQLKSKVFNRFQLSSQGLTPEDLTEDVPFLHFNVPSS 648


>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = +2

Query: 20  HYILFLVFDQGIIG 61
           H++LFL+F +G+IG
Sbjct: 320 HFVLFLIFVEGLIG 333


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 280 TPTPLPYIINFKKNCRKWCRNRMNS 354
           T T   YIINFKKN   + R +++S
Sbjct: 512 TKTTEEYIINFKKNSWLFFRKKIDS 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,578,911
Number of Sequences: 5004
Number of extensions: 24381
Number of successful extensions: 45
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)