Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31347
         (398 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    26   1.9  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   4.3  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   5.7  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    25   5.7  
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    24   7.6  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    24   7.6  
SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr 3...    24   7.6  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    24   10.0 
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch...    24   10.0 

>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 60  TCGKGSLTCVVLCVICKYFIYLFIYIY 140
           +C K   +   LC + KY IYLF+ I+
Sbjct: 152 SCKKEESSNKFLCPLSKYLIYLFLSIH 178


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -3

Query: 99  HTIQHTLMIPSRRFPYGNLVTTF 31
           HT++H   + S+++P   ++T F
Sbjct: 61  HTLEHLCFMGSKKYPMNGILTKF 83


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +3

Query: 90  VLCVICKYFIYLFIYIYACIHSIVLNFYR 176
           ++   C Y +++ I +Y C+    L FY+
Sbjct: 340 IVQAFCMYLVFINILLYICMVGYPLIFYQ 368


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 105 CKYFIYLFIYIYACIHSIVLNF 170
           C YFIY+ I ++ C +   + F
Sbjct: 143 CLYFIYIAIGVFGCSYIYTVTF 164


>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 84  CVVLCVICKYFIYLFIYIYACIHSIVLNFYRL 179
           C  +    KY IYL +  + C    +L+F+ L
Sbjct: 501 CFSMLSFAKYAIYLTLSTFVCSSRYLLDFHYL 532


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 112 YLHITHNTTHVNDPFPQVP 56
           Y +I  N+ HVN P P  P
Sbjct: 144 YPNIRKNSVHVNAPMPSFP 162


>SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 227

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 118 IKYLHITHNTTHVNDPFPQV 59
           I + HI   TTHV +PF  V
Sbjct: 66  INFGHIKQKTTHVLNPFKHV 85


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = +1

Query: 118 FIYLYIYTHAYIRSFLIFIVYT 183
           F+YLY+    +I  FL++++++
Sbjct: 196 FLYLYVLFTYFISIFLLYVLFS 217


>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 85  HVNDPFPQVPLR 50
           H+NDPFP V L+
Sbjct: 291 HLNDPFPSVDLQ 302


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,354,833
Number of Sequences: 5004
Number of extensions: 24467
Number of successful extensions: 54
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)