Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31347
         (398 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_02_0002 + 8412568-8412781,8412915-8413015,8413114-8413185,841...    28   3.1  
01_01_0633 - 4767914-4768020,4768057-4768085,4768590-4768745,476...    28   3.1  
01_01_0526 - 3857824-3857866,3858097-3858176,3858257-3858424,385...    27   7.2  

>04_02_0002 +
           8412568-8412781,8412915-8413015,8413114-8413185,
           8413267-8413380,8414248-8414269,8414450-8414598,
           8415054-8415203,8415369-8415401,8418268-8418474
          Length = 353

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 42  QGFRRGTCGKGSLTCVVLCVICK 110
           +G ++GT  K  LTC+VL ++CK
Sbjct: 325 KGCKKGTNQKALLTCLVLKMLCK 347


>01_01_0633 -
           4767914-4768020,4768057-4768085,4768590-4768745,
           4768835-4768983,4769106-4769638,4769900-4770068,
           4770255-4770347,4770641-4770698,4771392-4771471,
           4771548-4771715,4772090-4772242,4772756-4772884,
           4772996-4773085,4773990-4774129,4774683-4774814,
           4774916-4775087
          Length = 785

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 170 LSFIPISHALARVCRDDIE 226
           L ++P+ HA  R CR+D+E
Sbjct: 222 LGWLPVEHAALRDCREDVE 240


>01_01_0526 -
           3857824-3857866,3858097-3858176,3858257-3858424,
           3858542-3858643,3858973-3859125,3859865-3859993,
           3860115-3860204,3860759-3860839
          Length = 281

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 170 LSFIPISHALARVCRDDIE 226
           L ++PI HA  R CR+++E
Sbjct: 101 LGWLPIEHAALRDCREEVE 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,035,095
Number of Sequences: 37544
Number of extensions: 133188
Number of successful extensions: 304
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)