Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31344
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.03c |tim10||Tim9-Tim10 complex subunit Tim10|Schizosacch...    30   0.27 
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    27   1.9  
SPBC146.10 |mug57||meiotically upregulated gene Mug57|Schizosacc...    27   1.9  
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M...    26   3.3  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    25   5.7  
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces...    25   7.5  
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    25   7.5  
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    25   7.5  
SPAC6G10.03c |||abhydrolase family protein, unknown biological r...    25   10.0 
SPCC11E10.07c |||translation initiation factor eIF2B alpha subun...    25   10.0 

>SPAC222.03c |tim10||Tim9-Tim10 complex subunit
           Tim10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +1

Query: 229 IDHNLITRNHDKCRVSEFYDNVRTLKTVLTVD-CPWLNFESNRTLAQHM 372
           I + L+   H KC   ++Y+   T    + +D C    FE+N++L+QHM
Sbjct: 31  IFNRLVMTCHKKCISPKYYEADLTKGESVCIDRCVSKYFEANQSLSQHM 79


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 73   SPIYRPCFLDDYKCISDHLAANSKCIPGRGQIPS 174
            +P Y P FL+     SD +    + +P RG I S
Sbjct: 1362 TPSYTPSFLEGSPVFSDEILNRGEYMPHRGSISS 1395


>SPBC146.10 |mug57||meiotically upregulated gene
           Mug57|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 189

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 384 FXERHVLSQGPIGFKVQPRTVDG 316
           F ERH+++  PI +  + +T+DG
Sbjct: 122 FVERHIITSSPIEWNNEYKTIDG 144


>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 556

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 249 GNEIMVDVGGVXVWYFKLEHRYLVLR 172
           G+E++V   G  VW+F +E R +V R
Sbjct: 361 GSEMLVLSYGAEVWHFNVEQRSVVRR 386


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +1

Query: 268 RVSEFYDNVRTLKTVL-TVDC 327
           R+SE Y+ +R + TVL T+DC
Sbjct: 690 RISEHYNELRNVTTVLGTLDC 710


>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = +1

Query: 430 KLTTVFDXGNNFDLCSAF--TFADLAGGL--PILHINPNDQRT 546
           K+  +F+  N F LC +F   F  L   +  P L+INP D  T
Sbjct: 426 KMLNLFEDYNEFGLCKSFICLFKRLNEDIIGPKLNINPPDYTT 468


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 86  GPASWTITNASPTTW 130
           G A W IT A+P+ W
Sbjct: 272 GDAEWNITGAAPSEW 286


>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 123 PPGRELEMYPGQRADPLAVRDTGVPV 200
           PP  +   YP     PLA++  G P+
Sbjct: 407 PPQAQFSPYPAVAPSPLALQTRGAPI 432


>SPAC6G10.03c |||abhydrolase family protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 428

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -2

Query: 184 SRTARGSALCPGYISSSRPGGRRCICNRPRSRACRS 77
           S  A G+ L PG  +      RRCI NR R   CR+
Sbjct: 330 SEYALGNLLAPGAFA------RRCIMNRLRMLKCRT 359


>SPCC11E10.07c |||translation initiation factor eIF2B alpha
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 148 YISSSRPGGRRCICNRPRSRAC 83
           +++ SRP G  C+  R    AC
Sbjct: 165 FVTESRPSGSGCLMTRTLKNAC 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,160,612
Number of Sequences: 5004
Number of extensions: 40754
Number of successful extensions: 127
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)