Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31344
         (557 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0105 + 1287423-1289924                                           28   4.4  
08_01_0876 - 8598664-8599374                                           28   4.4  
01_06_1303 - 36132588-36132710,36133879-36134103,36134318-361347...    28   4.4  
03_02_0915 + 12360079-12360095,12360225-12361353                       27   7.7  

>10_01_0105 + 1287423-1289924
          Length = 833

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
 Frame = -3

Query: 540 LVIRVNVQDGQTPGQVCERESRTQVEI-----VAXIKHCR 436
           L+I  N   GQ PG +CE E+   +++        + HCR
Sbjct: 455 LIISSNYITGQVPGSICESENMKHLDLSNNLFEGEVPHCR 494


>08_01_0876 - 8598664-8599374
          Length = 236

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
 Frame = +2

Query: 80  STGPASWTITNASPT---TWPRTRNVSRAEGRSPR----STRYRC 193
           ++GP  WT+  A+P    T P++R   R   RSPR    + R RC
Sbjct: 152 ASGPRRWTMDGAAPLLPETSPKSRRGRRGGRRSPRRGPRTRRRRC 196


>01_06_1303 -
           36132588-36132710,36133879-36134103,36134318-36134713,
           36135352-36135547,36135591-36135740,36135818-36135924,
           36135987-36136094,36136354-36136435,36136436-36136536,
           36136778-36136996,36137455-36137583,36137665-36137742,
           36137816-36137929,36138071-36138230,36139224-36139441
          Length = 801

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +1

Query: 223 TYIDHNLITRNHDKCRVSEFYDNVRTLKTVLTVDCPWLNFESN 351
           TY+   +I  NH   R+ EF    + L     ++C W+    N
Sbjct: 139 TYVIPGIINYNHS--RIDEFIKKAQDLLDPTVLECAWMELSEN 179


>03_02_0915 + 12360079-12360095,12360225-12361353
          Length = 381

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = +1

Query: 91  CFLDDY--KCISDHLAANSKCIPG 156
           C  D +  +CI DH+AA S+C  G
Sbjct: 190 CCFDSFCDRCIRDHIAAKSRCACG 213


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,224,357
Number of Sequences: 37544
Number of extensions: 298251
Number of successful extensions: 752
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)