Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31343
(684 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p... 39 8e-04
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ... 38 0.001
SPCC1223.15c |spc19||DASH complex subunit Spc19|Schizosaccharomy... 28 1.4
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 28 1.4
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc... 26 4.4
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 26 4.4
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.4
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc... 26 5.8
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 26 5.8
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ... 25 7.7
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 25 7.7
>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 467
Score = 38.7 bits (86), Expect = 8e-04
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = +3
Query: 357 DYFRFYKVNL-KKECPFWA-DDSRCAMKYCHIKTCTKESVP 473
DYF +Y+VNL + CP W D++ C+ + C +K+ + +P
Sbjct: 54 DYFSYYRVNLYRSSCPLWENDNAMCSNQGCAVKSLNEIEIP 94
>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 571
Score = 37.9 bits (84), Expect = 0.001
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = +3
Query: 315 NVKIFPRIQSIVTK-DYFRFYKVNL-KKECPFWADDS-RCAMKYCHIKTCTKESVP 473
N ++ P + + K DY RFY++NL KEC + DD+ C C++ ++ VP
Sbjct: 63 NSRVSPLLFDLTEKSDYMRFYRLNLFNKECRYNLDDNVACGSSACNVLVTDEQDVP 118
>SPCC1223.15c |spc19||DASH complex subunit Spc19|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 152
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 246 CFDELHGSLGDCSCKVDTIDFFNNVKIFPRIQSIV 350
C D L S+G S +DT++ + + FPRI+ I+
Sbjct: 10 CVDSLQISIGTLSSSIDTLE--SGIHDFPRIKHIL 42
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 27.9 bits (59), Expect = 1.4
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +3
Query: 327 FPRIQSIVTKDYFRFYKVNLKKECPFWADDS 419
FP +T +F+ YK++++ +W D S
Sbjct: 1059 FPNETRFMTSFFFQIYKISMRNFVAYWRDSS 1089
>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = +3
Query: 189 IVQAVGYDTELTKPCDSTACFDELHGSLGDCSCKVDTIDFFNN 317
++ ++GY E T+ + F + GS+G C ++ F N
Sbjct: 34 LLMSLGYKPEFTREFSYVSIFGQSFGSMGLCPAMAGSLIFSMN 76
>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 612
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 235 TVQPASMSSTGPWGTAPVKST 297
+VQP +MS PWGT + +T
Sbjct: 157 SVQPDTMSCLSPWGTERLTAT 177
>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 390
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 453 CTKESVPGYETGYNNEYVDETPATKYSKEAQSDCKSDLDH 572
CT++S + +N + +D + A + SK + + KSDL H
Sbjct: 172 CTQKSAQ-MGSEFNPDSIDSSLAYRLSKLSMGNSKSDLSH 210
>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 372
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +3
Query: 273 GDCSCKVDTIDFFNNVKIFPRIQSIVTKDY 362
G C CK + ID +N R ++ +DY
Sbjct: 340 GRCFCKPEEIDLSSNSSCIARFINLTNEDY 369
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -1
Query: 276 PPRTRGAHRSRLYCRKASLAPCRNQPP 196
PP TR R L R SL P +QPP
Sbjct: 51 PPPTRRLPRKPLPFRSTSLQPPSSQPP 77
>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 634
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -1
Query: 525 WWQAFHLHTHYYIQFHSQ--VHFPSCKSLYG 439
W ++ HL T + FHSQ +H+ + YG
Sbjct: 108 WTKSVHLQTDRTVDFHSQGGIHYSTRIPKYG 138
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 25.4 bits (53), Expect = 7.7
Identities = 16/59 (27%), Positives = 24/59 (40%)
Frame = +3
Query: 390 KECPFWADDSRCAMKYCHIKTCTKESVPGYETGYNNEYVDETPATKYSKEAQSDCKSDL 566
K P ++D+ A+K + V T Y +TP +K E SDC S +
Sbjct: 186 KGLPRFSDEVSQALKNVPLIDVDSMGVMAPGTFYERAATTQTPGSKPVPEGNSDCLSGI 244
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,804,155
Number of Sequences: 5004
Number of extensions: 57344
Number of successful extensions: 163
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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