Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31343
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1032 - 29861859-29862011,29862347-29862470,29862557-298627...    70   2e-12
01_01_0172 + 1485170-1485176,1485480-1485511,1485622-1485870,148...    31   0.85 
06_03_0785 - 24563310-24565004,24565302-24565384,24565484-245660...    29   3.4  
01_07_0122 - 41196081-41196205,41197561-41198245,41198961-411993...    28   6.0  
03_02_0278 + 7060456-7060583,7060700-7060814,7060910-7061026,706...    28   7.9  
01_06_1315 + 36226262-36226533,36227946-36228060,36228710-362287...    28   7.9  

>03_05_1032 -
           29861859-29862011,29862347-29862470,29862557-29862759,
           29863081-29863199,29863489-29863623,29863695-29863950,
           29864749-29864880,29865001-29865222
          Length = 447

 Score = 70.1 bits (164), Expect = 2e-12
 Identities = 26/70 (37%), Positives = 40/70 (57%)
 Frame = +3

Query: 264 GSLGDCSCKVDTIDFFNNVKIFPRIQSIVTKDYFRFYKVNLKKECPFWADDSRCAMKYCH 443
           G + DC C  +T+D  N   + P +Q +VT  +FR++KV L  +CPFW DD  C ++ C 
Sbjct: 81  GMVEDCCCDYETVDAINEEVLHPILQELVTLPFFRYFKVKLWCDCPFWPDDGMCRLRDCS 140

Query: 444 IKTCTKESVP 473
           +  C +   P
Sbjct: 141 VCECPENEFP 150


>01_01_0172 +
           1485170-1485176,1485480-1485511,1485622-1485870,
           1486350-1487813,1487906-1487959
          Length = 601

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 18/64 (28%), Positives = 28/64 (43%)
 Frame = +3

Query: 174 LFALAIVQAVGYDTELTKPCDSTACFDELHGSLGDCSCKVDTIDFFNNVKIFPRIQSIVT 353
           L    +++    DT +  PCD     D+LH  + D S  VD   + N+  + P I     
Sbjct: 230 LLGAYVIEKPEVDTPMDLPCDD----DDLHLVIADRSFNVDGSLYMNSTGVAPNIHPQWA 285

Query: 354 KDYF 365
            +YF
Sbjct: 286 PEYF 289


>06_03_0785 - 24563310-24565004,24565302-24565384,24565484-24566039,
            24566397-24566513,24566565-24567131,24568632-24568702,
            24569833-24569903,24570270-24570441,24571229-24572212,
            24573128-24574808
          Length = 1998

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
 Frame = +1

Query: 16   LLSPCRDYSLVYHTYITVVYVRS-EATFVSAIIL---MSWRGHPQRCH 147
            LL+P R+Y +V++ YI  +     + ++VS  +L   + W+G    CH
Sbjct: 942  LLNPGRNYGMVFYVYIGEICSEPVKISYVSLQLLYGFLFWKGKKNLCH 989


>01_07_0122 -
           41196081-41196205,41197561-41198245,41198961-41199329,
           41199405-41199514,41200539-41200833
          Length = 527

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = -1

Query: 510 HLHTHYYIQFHSQVHFPSCKSLYGSISLHTYCHQPRTGIP 391
           H H H++   H   H  S  S      +H   H+PR G P
Sbjct: 349 HHHGHHHHHHHHHGHEDSRHSAPAQAPVHYPVHEPRYGAP 388


>03_02_0278 +
           7060456-7060583,7060700-7060814,7060910-7061026,
           7061142-7061282
          Length = 166

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/33 (27%), Positives = 22/33 (66%)
 Frame = -3

Query: 322 FTLLKKSIVSTLQEQSPKDPWSSSKQAVLSQGF 224
           F ++K +++ T++E+ P D WS + ++  S+ +
Sbjct: 119 FEVVKFALLDTIKEEVPADMWSPAMKSAWSEAY 151


>01_06_1315 +
           36226262-36226533,36227946-36228060,36228710-36228752,
           36229953-36230329,36230330-36230481,36230591-36230838,
           36230919-36231047,36231130-36231739,36231842-36232086,
           36232195-36232325
          Length = 773

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/67 (29%), Positives = 24/67 (35%), Gaps = 4/67 (5%)
 Frame = -1

Query: 678 HFHKNYHVHHRELSILLFHTGWQH*WSYSNSSTEDRDPNQTYSRTVL--L*SIWWQAFH- 508
           H H NY+V      IL    GW    SY          +  Y  TV     ++WW A   
Sbjct: 309 HNHMNYNVSFHWHGILQLRNGWADGPSYITQCPIQGGGSYVYDFTVTGQRGTLWWHAHFS 368

Query: 507 -LHTHYY 490
            L  H Y
Sbjct: 369 WLRVHLY 375


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,816,246
Number of Sequences: 37544
Number of extensions: 358706
Number of successful extensions: 1037
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)