Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31343
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132877-13|CAC70110.4|  478|Caenorhabditis elegans Hypothetical...    94   1e-19
AL132877-14|CAD92388.1|  439|Caenorhabditis elegans Hypothetical...    37   0.012
AF036705-8|AAB95169.1|  685|Caenorhabditis elegans Hypothetical ...    33   0.14 
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr...    31   1.0  
AF016435-2|AAB65877.2|  380|Caenorhabditis elegans Hypothetical ...    31   1.0  
Z50872-1|CAA90754.2| 1052|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AY204202-1|AAO39203.1|  339|Caenorhabditis elegans nuclear recep...    29   2.3  
AY204201-1|AAO39202.1|  409|Caenorhabditis elegans nuclear recep...    29   2.3  
AY204200-1|AAO39201.1|  304|Caenorhabditis elegans nuclear recep...    29   2.3  
AF408754-1|AAO27833.1|  418|Caenorhabditis elegans nuclear recep...    29   2.3  
AF016435-1|AAB65878.1|  474|Caenorhabditis elegans Hypothetical ...    29   2.3  
AC084155-11|AAQ91893.1|  304|Caenorhabditis elegans Nuclear horm...    29   2.3  
AC084155-10|AAG23368.3|  418|Caenorhabditis elegans Nuclear horm...    29   2.3  
Z81086-6|CAB03116.1|  610|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z93375-4|CAB07562.2|  647|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z78418-3|CAB01697.1|  932|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z49907-4|CAA90086.1|  454|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AF036705-9|AAO91724.1|  686|Caenorhabditis elegans Hypothetical ...    27   9.4  

>AL132877-13|CAC70110.4|  478|Caenorhabditis elegans Hypothetical
           protein Y105E8B.8a protein.
          Length = 478

 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 50/148 (33%), Positives = 72/148 (48%), Gaps = 2/148 (1%)
 Frame = +3

Query: 246 CFDELHGSLGDCSC-KVDTIDFFNNVKIFPRIQSIVTKDYFRFYKVNLKKECPFWADDSR 422
           CF +   ++  C C K  TID  NN +I+ ++Q ++ KD+FRFYKVN+ K CPFWADD +
Sbjct: 28  CFCKGFEAVEPCDCSKPQTIDKLNNHRIYEKVQKLLKKDFFRFYKVNMDKTCPFWADDRQ 87

Query: 423 CAMKYCHIKTCTKESVPGYETGYNNEYVDETPATKYSKEAQSDCKSDLDHDPQLSYLNMT 602
           C    C I  C  E VP    G          A    +E   D +   D    +  ++ T
Sbjct: 88  CGTNQCGIAFCDDE-VP---AGLRRRNAVNMEAAAVKEEEDDDAEKCADAGNNIDPMDRT 143

Query: 603 ISAANQYEIAKWKVHDDA-HDNFCESDD 683
           +    + ++     HDD   D FCE +D
Sbjct: 144 LHDDEKRQLDAMDHHDDGLEDKFCEIED 171


>AL132877-14|CAD92388.1|  439|Caenorhabditis elegans Hypothetical
           protein Y105E8B.8b protein.
          Length = 439

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +3

Query: 384 LKKECPFWADDSRCAMKYCHIKTCTKESVPG 476
           + K CPFWADD +C    C I  C  E   G
Sbjct: 1   MDKTCPFWADDRQCGTNQCGIAFCDDEVPAG 31


>AF036705-8|AAB95169.1|  685|Caenorhabditis elegans Hypothetical
           protein F37C4.3 protein.
          Length = 685

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
 Frame = -3

Query: 535 LEYLVAGVSSTYSLLYPVS*PGTLSFVQVF--IWQYFI---AHLLSSAQNGHSFFKL 380
           L+Y   GV    SL+Y  S PGT++F  VF  IWQ+ I    +LL S++  +  +++
Sbjct: 168 LQYGYYGVIGLISLVYFYSVPGTVAFNSVFARIWQFMIGMVVYLLGSSKPTYPHYRV 224


>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
            ZK783.1 protein.
          Length = 2585

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +3

Query: 225  KPCDSTACFDELHGSLGDCSCKVDTID 305
            KPCDST    + H S  + SC+VDT+D
Sbjct: 1538 KPCDSTQS-SKSHCSESNMSCEVDTVD 1563


>AF016435-2|AAB65877.2|  380|Caenorhabditis elegans Hypothetical
           protein F59D6.2 protein.
          Length = 380

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 32/114 (28%), Positives = 45/114 (39%), Gaps = 7/114 (6%)
 Frame = +3

Query: 126 RTSTEMPQ--KSYCVVFILFALAIVQAVG--YDTE---LTKPCDSTACFDELHGSLGDCS 284
           +T T +P    SY  V  L    IV A G  YD      T PC STA   +L  ++G  S
Sbjct: 256 QTDTAIPDTTSSYTGVPNLVLAEIVIATGAQYDWNHQAYTLPCSSTATLPDLVFTIGGNS 315

Query: 285 CKVDTIDFFNNVKIFPRIQSIVTKDYFRFYKVNLKKECPFWADDSRCAMKYCHI 446
             V  +++  N+ + P  Q  ++      +        P W         YCHI
Sbjct: 316 YNVRAVEYVVNLNL-PNGQCALS-----LFGTFSSPSGPLWVFGDNFLRSYCHI 363


>Z50872-1|CAA90754.2| 1052|Caenorhabditis elegans Hypothetical
           protein C05D12.2 protein.
          Length = 1052

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 498 EYVDETPATKYSKEAQSDCKSDLDHDPQLSYLNMTISAANQYEI 629
           +Y  E     Y K A     + +D+D  L+Y+ +TI  ++Q EI
Sbjct: 293 QYFPENVQVGYGKTADEQLNTYVDNDGDLAYILLTIRPSSQAEI 336


>AY204202-1|AAO39203.1|  339|Caenorhabditis elegans nuclear receptor
           NHR-114 protein.
          Length = 339

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
 Frame = +3

Query: 420 RCAMKYCHIKTCTKESVPGYETGYNNEYVDETPATKYSK---EAQSDCKSD 563
           RCA +YC  + C    +       N + +  T  T+  K   +  SDC SD
Sbjct: 64  RCACRYCRFEKCLSVGMDRNALQQNRDPIGYTKRTRRPKKELKTTSDCSSD 114


>AY204201-1|AAO39202.1|  409|Caenorhabditis elegans nuclear receptor
           NHR-114 protein.
          Length = 409

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
 Frame = +3

Query: 420 RCAMKYCHIKTCTKESVPGYETGYNNEYVDETPATKYSK---EAQSDCKSD 563
           RCA +YC  + C    +       N + +  T  T+  K   +  SDC SD
Sbjct: 55  RCACRYCRFEKCLSVGMDRNALQQNRDPIGYTKRTRRPKKELKTTSDCSSD 105


>AY204200-1|AAO39201.1|  304|Caenorhabditis elegans nuclear receptor
           NHR-114 protein.
          Length = 304

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
 Frame = +3

Query: 420 RCAMKYCHIKTCTKESVPGYETGYNNEYVDETPATKYSK---EAQSDCKSD 563
           RCA +YC  + C    +       N + +  T  T+  K   +  SDC SD
Sbjct: 64  RCACRYCRFEKCLSVGMDRNALQQNRDPIGYTKRTRRPKKELKTTSDCSSD 114


>AF408754-1|AAO27833.1|  418|Caenorhabditis elegans nuclear receptor
           protein protein.
          Length = 418

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
 Frame = +3

Query: 420 RCAMKYCHIKTCTKESVPGYETGYNNEYVDETPATKYSK---EAQSDCKSD 563
           RCA +YC  + C    +       N + +  T  T+  K   +  SDC SD
Sbjct: 64  RCACRYCRFEKCLSVGMDRNALQQNRDPIGYTKRTRRPKKELKTTSDCSSD 114


>AF016435-1|AAB65878.1|  474|Caenorhabditis elegans Hypothetical
           protein F59D6.3 protein.
          Length = 474

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 7/119 (5%)
 Frame = +3

Query: 111 THVMARTSTEMPQKS--YCVVFILFALAIVQAVG--YDTE---LTKPCDSTACFDELHGS 269
           T+   +T T +P  S  +  V  +    IV+A G  YD      T PC STA   ++  +
Sbjct: 345 TYSRTQTETTIPDTSSGWTGVPNVVLAGIVKATGATYDWNHQAYTLPCSSTATLPDMVFT 404

Query: 270 LGDCSCKVDTIDFFNNVKIFPRIQSIVTKDYFRFYKVNLKKECPFWADDSRCAMKYCHI 446
           +G  S  V  +++  N+ + P  Q  ++      +     +  P W         YCH+
Sbjct: 405 IGGNSYNVRAVEYVVNLNL-PNGQCALS-----LFGTAASQSGPAWILGDNFLRSYCHV 457


>AC084155-11|AAQ91893.1|  304|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 114, isoform b protein.
          Length = 304

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
 Frame = +3

Query: 420 RCAMKYCHIKTCTKESVPGYETGYNNEYVDETPATKYSK---EAQSDCKSD 563
           RCA +YC  + C    +       N + +  T  T+  K   +  SDC SD
Sbjct: 64  RCACRYCRFEKCLSVGMDRNALQQNRDPIGYTKRTRRPKKELKTTSDCSSD 114


>AC084155-10|AAG23368.3|  418|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 114, isoform a protein.
          Length = 418

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
 Frame = +3

Query: 420 RCAMKYCHIKTCTKESVPGYETGYNNEYVDETPATKYSK---EAQSDCKSD 563
           RCA +YC  + C    +       N + +  T  T+  K   +  SDC SD
Sbjct: 64  RCACRYCRFEKCLSVGMDRNALQQNRDPIGYTKRTRRPKKELKTTSDCSSD 114


>Z81086-6|CAB03116.1|  610|Caenorhabditis elegans Hypothetical
           protein F53B6.6 protein.
          Length = 610

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/74 (21%), Positives = 31/74 (41%)
 Frame = +3

Query: 417 SRCAMKYCHIKTCTKESVPGYETGYNNEYVDETPATKYSKEAQSDCKSDLDHDPQLSYLN 596
           ++   K  H+  C +++   Y    ++ Y D+    K+       C +D    PQ+ Y +
Sbjct: 224 AQVGQKVTHVWRCDQDASHVYGILIHSCYADDGHGNKFELVDDRGCSTDPFLLPQIEYEH 283

Query: 597 MTISAANQYEIAKW 638
             ISA     + K+
Sbjct: 284 GAISAYTNAHVFKY 297


>Z93375-4|CAB07562.2|  647|Caenorhabditis elegans Hypothetical
           protein C38C6.2 protein.
          Length = 647

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
 Frame = -1

Query: 657 VHHRELSILLFH----TGWQH*WSYSNSSTEDRDPNQTYSR 547
           +H +E++I++      T  +H W + NS+T  + PN  YS+
Sbjct: 214 IHEKEMNIVISFPIATTSLEHEW-FLNSATASKTPNANYSQ 253


>Z78418-3|CAB01697.1|  932|Caenorhabditis elegans Hypothetical
           protein F25D7.4 protein.
          Length = 932

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 513 TPATKYSKEAQSDCKSDLDHDPQLSYLNMTISAAN 617
           +P+T  S + ++D  SDLD   Q SY ++T  +A+
Sbjct: 11  SPSTGRSNKEETDITSDLDPRRQRSYSDLTAFSAS 45


>Z49907-4|CAA90086.1|  454|Caenorhabditis elegans Hypothetical
           protein B0491.4 protein.
          Length = 454

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = +3

Query: 267 SLGDCSCKVDTIDFFNNVKIFPRIQ----SIVTKDYFRF 371
           S G CS  VD +D +++  I+ RIQ    +  T DY +F
Sbjct: 139 SEGGCSYSVDDVDIYDDGTIYARIQFKYLASCTVDYRKF 177


>AF036705-9|AAO91724.1|  686|Caenorhabditis elegans Hypothetical
           protein F37C4.2 protein.
          Length = 686

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = -3

Query: 499 SLLYPVS*PGTLSFVQVF--IWQYFI 428
           SL+Y  S PGT++F  VF  IWQ+ I
Sbjct: 181 SLVYFYSVPGTVAFNSVFARIWQFMI 206


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,680,661
Number of Sequences: 27780
Number of extensions: 331669
Number of successful extensions: 1125
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)