Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31341
(585 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0434 + 24252994-24253449,24254791-24254877,24255450-242557... 36 0.018
09_06_0267 + 21938300-21938371,21938963-21939235,21940665-219412... 35 0.055
04_04_1099 - 30886361-30886591,30886739-30886941,30887030-308875... 35 0.055
07_03_0968 - 23027940-23028149,23028800-23029002,23029610-230301... 34 0.096
05_06_0191 - 26265460-26267016,26267858-26268356,26268789-262688... 29 2.1
10_01_0172 - 1928648-1930751,1932019-1932243,1933709-1934676 29 3.6
02_01_0365 + 2621302-2621711,2622442-2622620,2623381-2623496,262... 29 3.6
09_01_0042 + 764349-764763,764853-764902,765096-765172,766179-76... 28 4.8
02_02_0737 - 13529180-13529543,13530661-13531178 28 6.3
>03_05_0434 +
24252994-24253449,24254791-24254877,24255450-24255748,
24256146-24256383,24256907-24257441,24257527-24257729,
24258311-24258520
Length = 675
Score = 36.3 bits (80), Expect = 0.018
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +3
Query: 354 NSEKADFERAIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILP 491
N E + A+E G+G+F ++LA G+ E M+++ +SF+ P
Sbjct: 195 NMETYTTDEALEFMGFGKFQLLVLAYAGMGWVVESMEIMLLSFVGP 240
Score = 30.3 bits (65), Expect = 1.2
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +2
Query: 509 NLTTQTKGWLNSIIFIGMMVGAYAW 583
N++ + + L+S++F GM++GA W
Sbjct: 247 NISAENESLLSSVVFAGMLIGASGW 271
>09_06_0267 +
21938300-21938371,21938963-21939235,21940665-21941202,
21941288-21941490,21941603-21941827
Length = 436
Score = 34.7 bits (76), Expect = 0.055
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +2
Query: 512 LTTQTKGWLNSIIFIGMMVGAYAW 583
L+ Q + + S++F+GM+VGAY+W
Sbjct: 81 LSAQAESLITSVVFVGMLVGAYSW 104
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +3
Query: 375 ERAIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCD 506
+ A+ G+G+F +LA G+ SE M+++ +SF+ S Q +
Sbjct: 35 DEALISMGFGKFQAFVLAYSGMAKISEAMEMMLLSFVGQSVQAE 78
>04_04_1099 -
30886361-30886591,30886739-30886941,30887030-30887555,
30887751-30887988,30888592-30888695,30888784-30889059,
30889216-30889218
Length = 526
Score = 34.7 bits (76), Expect = 0.055
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +2
Query: 470 LDVVHPTLGTVRLNLTTQTKGWLNSIIFIGMMVGAYAW 583
L V P++ + LT+ + + SI+F+GM++GAY W
Sbjct: 46 LSFVGPSV-QLEWKLTSHQESMITSIVFVGMLIGAYTW 82
Score = 33.5 bits (73), Expect = 0.13
Identities = 13/42 (30%), Positives = 28/42 (66%)
Frame = +3
Query: 381 AIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCD 506
A+ +G+GR+ ++L+ G+ +E M+++ +SF+ PS Q +
Sbjct: 15 ALLSSGFGRYQILILSYAGVGLIAEAMEMMLLSFVGPSVQLE 56
>07_03_0968 -
23027940-23028149,23028800-23029002,23029610-23030138,
23030342-23030579,23031121-23031168,23031199-23031494
Length = 507
Score = 33.9 bits (74), Expect = 0.096
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = +3
Query: 333 SDPEKGSNSEKADFERAIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCD 506
++ E+ E + A+ G+GRF ++LA + +E M+V+ +SF+ PS + +
Sbjct: 6 AEEEEEEEEETYTTDDALTRAGFGRFQALVLAYACVGWVAEAMEVMLLSFVGPSVKAE 63
>05_06_0191 -
26265460-26267016,26267858-26268356,26268789-26268859,
26269079-26269515,26269626-26269681,26269682-26270479,
26270918-26270973
Length = 1157
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +1
Query: 412 TTCCWQYAVSSALPRRWTSSRCRSSYPRHSA 504
T CCW + AL R WT R RS H A
Sbjct: 538 TPCCWYFLWLVALNRCWTVYRLRSRGISHPA 568
>10_01_0172 - 1928648-1930751,1932019-1932243,1933709-1934676
Length = 1098
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 74 LTNNKEEAHRIVTGKLYAVGS-ATPPSERRLSVPATTIQSR 193
LT+NKE + IVT + AVGS P + L P + + R
Sbjct: 421 LTDNKERSRIIVTSRFQAVGSTCCRPENKDLLYPISFLSPR 461
>02_01_0365 +
2621302-2621711,2622442-2622620,2623381-2623496,
2623626-2623964,2624113-2624307,2624505-2624594,
2625288-2625518,2625632-2625952
Length = 626
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -1
Query: 243 CEDSWAPGQ-FLPSYAGGRLCMVVAGTLKRLSLGGVALPTAYSLPVTIRCASSLLF 79
C +S P FLP+ GRLC + +K L L T++ T++C SS +F
Sbjct: 187 CHESVNPEHVFLPTTRHGRLCKHCSSKMKILDAINAHLGTSF----TVKCPSSDIF 238
>09_01_0042 +
764349-764763,764853-764902,765096-765172,766179-766236,
767481-767607,768665-768769,768842-769424,769470-769775,
770048-770139,770391-770440
Length = 620
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -3
Query: 358 ELEPFSGSDFDFLTEGTTPSSAVLEPGPF 272
E+ P SGS F+FLTE T S PG +
Sbjct: 354 EMMPVSGSPFNFLTETTIGSRIDQVPGGY 382
>02_02_0737 - 13529180-13529543,13530661-13531178
Length = 293
Score = 27.9 bits (59), Expect = 6.3
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = -1
Query: 204 YAGGRLCMVVAGTLKRL--SLGGVALPTAYSLPVTIRCAS 91
+AGG + AGTL+RL LGG TA++L T+R +S
Sbjct: 186 HAGG-FVLHPAGTLRRLRHGLGGFTTLTAWALRRTLRASS 224
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,802,374
Number of Sequences: 37544
Number of extensions: 450962
Number of successful extensions: 1295
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1295
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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