Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31341
         (585 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22175-2|CAA80131.2|  520|Caenorhabditis elegans Hypothetical pr...    36   0.016
Z11115-20|CAA77460.2|  520|Caenorhabditis elegans Hypothetical p...    36   0.016
U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical pr...    32   0.26 
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr...    32   0.26 
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    32   0.26 
Z81533-3|CAB04335.1|  327|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily a...    29   2.4  
AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily a...    29   2.4  
Z81533-13|CAB04336.2|  323|Caenorhabditis elegans Hypothetical p...    29   3.2  
AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin syntha...    29   3.2  
AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin syntha...    29   3.2  
Z99709-5|CAB16860.1|  246|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z35604-2|CAA84677.1|  809|Caenorhabditis elegans Hypothetical pr...    27   9.8  
X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase...    27   9.8  
U19744-1|AAA85704.1|  809|Caenorhabditis elegans integrin beta p...    27   9.8  
D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosi...    27   9.8  
AF077533-1|AAZ91357.1| 1126|Caenorhabditis elegans Hypothetical ...    27   9.8  
AF003137-1|AAB93642.1|  294|Caenorhabditis elegans Hypothetical ...    27   9.8  
AC024882-14|AAF60927.1|  360|Caenorhabditis elegans Hypothetical...    27   9.8  

>Z22175-2|CAA80131.2|  520|Caenorhabditis elegans Hypothetical
           protein ZK637.1 protein.
          Length = 520

 Score = 36.3 bits (80), Expect = 0.016
 Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +3

Query: 342 EKGSNSEKA-DFERAIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCD 506
           ++  +SEK    + A+E  G+GRF   L  + G+   ++ M+++ +S I P+  C+
Sbjct: 58  QRSPDSEKTFTVDEAVEALGFGRFQLKLSILTGMAWMADAMEMMLLSLISPALACE 113


>Z11115-20|CAA77460.2|  520|Caenorhabditis elegans Hypothetical
           protein ZK637.1 protein.
          Length = 520

 Score = 36.3 bits (80), Expect = 0.016
 Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +3

Query: 342 EKGSNSEKA-DFERAIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCD 506
           ++  +SEK    + A+E  G+GRF   L  + G+   ++ M+++ +S I P+  C+
Sbjct: 58  QRSPDSEKTFTVDEAVEALGFGRFQLKLSILTGMAWMADAMEMMLLSLISPALACE 113


>U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical
           protein K06A9.1c protein.
          Length = 825

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 27/93 (29%), Positives = 41/93 (44%)
 Frame = -3

Query: 403 PYPVSSIARSKSAFSELEPFSGSDFDFLTEGTTPSSAVLEPGPFSCRSPFTSQL*GFLGP 224
           P P SS     S  S     SG+       G+T S+  + PG  S  +  T  +     P
Sbjct: 118 PVPGSSSTIGSSTPSASSSSSGTMSTI--SGSTGSTVTVVPGSSSTFASSTP-IASSSSP 174

Query: 223 GSVSTILCGRAALYGGRGDTQTSLTGGSGATNS 125
           GS  T+  G ++ YG    + +S + G+ +TNS
Sbjct: 175 GSTVTVAPGSSSTYGSSTPSASSSSSGTMSTNS 207


>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
           protein K06A9.1a protein.
          Length = 1032

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 27/93 (29%), Positives = 41/93 (44%)
 Frame = -3

Query: 403 PYPVSSIARSKSAFSELEPFSGSDFDFLTEGTTPSSAVLEPGPFSCRSPFTSQL*GFLGP 224
           P P SS     S  S     SG+       G+T S+  + PG  S  +  T  +     P
Sbjct: 325 PVPGSSSTIGSSTPSASSSSSGTMSTI--SGSTGSTVTVVPGSSSTFASSTP-IASSSSP 381

Query: 223 GSVSTILCGRAALYGGRGDTQTSLTGGSGATNS 125
           GS  T+  G ++ YG    + +S + G+ +TNS
Sbjct: 382 GSTVTVAPGSSSTYGSSTPSASSSSSGTMSTNS 414


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
           protein K06A9.1b protein.
          Length = 2232

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 27/93 (29%), Positives = 41/93 (44%)
 Frame = -3

Query: 403 PYPVSSIARSKSAFSELEPFSGSDFDFLTEGTTPSSAVLEPGPFSCRSPFTSQL*GFLGP 224
           P P SS     S  S     SG+       G+T S+  + PG  S  +  T  +     P
Sbjct: 325 PVPGSSSTIGSSTPSASSSSSGTMSTI--SGSTGSTVTVVPGSSSTFASSTP-IASSSSP 381

Query: 223 GSVSTILCGRAALYGGRGDTQTSLTGGSGATNS 125
           GS  T+  G ++ YG    + +S + G+ +TNS
Sbjct: 382 GSTVTVAPGSSSTYGSSTPSASSSSSGTMSTNS 414


>Z81533-3|CAB04335.1|  327|Caenorhabditis elegans Hypothetical
           protein F36G9.5 protein.
          Length = 327

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 449 FRGDGRHLDVVHPTLGTVRLNLTTQTKGWLNSIIFIGMMVGAYAW 583
           F G+G    V +P  G++ L +T    GW N+ I   +M   + W
Sbjct: 173 FPGNGFCSHVAYPIYGSIMLRVTDTMFGWTNNYI---LMFNTFLW 214


>AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform b protein.
          Length = 774

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 6   STTSVKFTSPHPHRS*PPEVAERSQTTRKKHIGSSPASY 122
           +T  +K T+ HPHR  PP   ++   T+ +H G   +S+
Sbjct: 688 NTRHLKRTTEHPHRKQPP---QKRDNTKDQHRGGKKSSH 723


>AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 343, isoform a protein.
          Length = 996

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 6    STTSVKFTSPHPHRS*PPEVAERSQTTRKKHIGSSPASY 122
            +T  +K T+ HPHR  PP   ++   T+ +H G   +S+
Sbjct: 910  NTRHLKRTTEHPHRKQPP---QKRDNTKDQHRGGKKSSH 945


>Z81533-13|CAB04336.2|  323|Caenorhabditis elegans Hypothetical
           protein F36G9.6 protein.
          Length = 323

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +2

Query: 449 FRGDGRHLDVVHPTLGTVRLNLTTQTKGWLNSIIFIGMMVGAYAW 583
           F GDG    + +P  G++ L  T    GW N+ +   +M   + W
Sbjct: 169 FPGDGYCSHIAYPIFGSILLRATGTIFGWTNNFL---VMFNTFFW 210


>AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin synthase 2
            protein.
          Length = 1668

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = -2

Query: 239  RILGPRVSFYHPMRAGGFVWWSRGHSNVSHWGEWRYQQRIAC 114
            R LG      HP   G  VW+ +    + HW +   +  I C
Sbjct: 887  RRLGAACGRIHPRGDGAMVWYQKFEYAIGHWLQKATEHMIGC 928


>AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin synthase
            protein 2 protein.
          Length = 1668

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = -2

Query: 239  RILGPRVSFYHPMRAGGFVWWSRGHSNVSHWGEWRYQQRIAC 114
            R LG      HP   G  VW+ +    + HW +   +  I C
Sbjct: 887  RRLGAACGRIHPRGDGAMVWYQKFEYAIGHWLQKATEHMIGC 928


>Z99709-5|CAB16860.1|  246|Caenorhabditis elegans Hypothetical
           protein C47B2.5 protein.
          Length = 246

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +3

Query: 378 RAIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCDLTSPLRLKD 533
           R  EL G G      +A CGL STS E+ V+   F L       +   +L+D
Sbjct: 188 RGSELIGAGMVVNDWVAFCGLDSTSTELSVVESIFKLGEQGAPTSISNQLRD 239


>Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical protein
            ZK1067.1 protein.
          Length = 1323

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 37   TRTVHSHLKWRNAHKQQGRSTSDRHRQAIRCW 132
            T ++H+ LK  N   Q    + D +++ +RCW
Sbjct: 1093 TDSIHNFLKDGNRLSQPPNCSQDLYQELLRCW 1124


>Z35604-2|CAA84677.1|  809|Caenorhabditis elegans Hypothetical
           protein ZK1058.2 protein.
          Length = 809

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +2

Query: 446 HFRGDGRHLDVVHPTLGTVRLN 511
           HF GDGR   VV P  GT  L+
Sbjct: 291 HFAGDGRLAGVVEPNDGTCHLD 312


>X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase
            protein.
          Length = 1323

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 37   TRTVHSHLKWRNAHKQQGRSTSDRHRQAIRCW 132
            T ++H+ LK  N   Q    + D +++ +RCW
Sbjct: 1093 TDSIHNFLKDGNRLSQPPNCSQDLYQELLRCW 1124


>U19744-1|AAA85704.1|  809|Caenorhabditis elegans integrin beta
           pat-3 protein.
          Length = 809

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +2

Query: 446 HFRGDGRHLDVVHPTLGTVRLN 511
           HF GDGR   VV P  GT  L+
Sbjct: 291 HFAGDGRLAGVVEPNDGTCHLD 312


>D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosine
            kinase protein.
          Length = 1374

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 37   TRTVHSHLKWRNAHKQQGRSTSDRHRQAIRCW 132
            T ++H+ LK  N   Q    + D +++ +RCW
Sbjct: 1144 TDSIHNFLKDGNRLSQPPNCSQDLYQELLRCW 1175


>AF077533-1|AAZ91357.1| 1126|Caenorhabditis elegans Hypothetical
            protein F54G2.1a protein.
          Length = 1126

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 15/62 (24%), Positives = 27/62 (43%)
 Frame = -3

Query: 472  EMTSISSEVLTRPHTANSM*WKRPYPVSSIARSKSAFSELEPFSGSDFDFLTEGTTPSSA 293
            ++ ++ S  L+ P     +  K  YP   + ++K     L P     F+F      PS+A
Sbjct: 987  QIIALDSNGLSDPFVVIEIIPKFRYPAVPVVKTKVVSKSLNPIFDETFEFHIPPNPPSTA 1046

Query: 292  VL 287
            +L
Sbjct: 1047 ML 1048


>AF003137-1|AAB93642.1|  294|Caenorhabditis elegans Hypothetical
           protein C27A12.4 protein.
          Length = 294

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +3

Query: 216 TDPGPKNPHNCDVKGDLQLNGPGSKTAELGVVPSVKKSKS 335
           TDP     H+    GDL      SKTAE+ V+P + + KS
Sbjct: 4   TDPSQLYNHHSVTNGDLCT----SKTAEMEVLPPIGRDKS 39


>AC024882-14|AAF60927.1|  360|Caenorhabditis elegans Hypothetical
           protein Y9C9A.1 protein.
          Length = 360

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
 Frame = +3

Query: 276 GPGSKTAELGVVPSVKKSKSDPEKGSNSEKADFERAIELTGYGRFHYMLLAV--CGLVST 449
           G G+ T E     S+ K+       SNSEK    +AIE  G    H M  A     L  T
Sbjct: 244 GAGTVTKEFQQRVSITKTSGVTTTLSNSEKYSVSKAIE-AGISATHGMFTAKVNTALTKT 302

Query: 450 SEEMDVISMSFILPSA 497
           SE +    +  ++  A
Sbjct: 303 SERITTSQLQRMIQDA 318


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,536,353
Number of Sequences: 27780
Number of extensions: 320913
Number of successful extensions: 861
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)