Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31340
         (633 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    23   3.3  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    23   3.3  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    23   3.3  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    23   3.3  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    23   3.3  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    23   3.3  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   3.3  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         21   9.9  

>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 17  RERENTLYSHTKTQFTFRKQSKSR 88
           RERE   Y +  +   +RK SK R
Sbjct: 43  REREQKSYKNENSYRKYRKTSKER 66


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 17  RERENTLYSHTKTQFTFRKQSKSR 88
           RERE   Y +  +   +RK SK R
Sbjct: 43  REREQKSYKNENSYRKYRKTSKER 66


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 17  RERENTLYSHTKTQFTFRKQSKSR 88
           RERE   Y +  +   +RK SK R
Sbjct: 43  REREQKSYKNENSYRKYRKTSKER 66


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 17  RERENTLYSHTKTQFTFRKQSKSR 88
           RERE   Y +  +   +RK SK R
Sbjct: 43  REREQKSYKNENSYRKYRKTSKER 66


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 17  RERENTLYSHTKTQFTFRKQSKSR 88
           RERE   Y +  +   +RK SK R
Sbjct: 43  REREQKSYKNENSYRKYRKTSKER 66


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 17  RERENTLYSHTKTQFTFRKQSKSR 88
           RERE   Y +  +   +RK SK R
Sbjct: 43  REREQKSYKNENSYRKYRKTSKER 66


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 488 SMSSERISIGRDHKEYFDSLRMSESC 411
           +M  E I   R+H EY D  R  + C
Sbjct: 334 TMPMELIENLRNHPEYIDETRNYQEC 359


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -3

Query: 532 WVRKWIDIRDKLGATQCL 479
           W  KW+ I     A +CL
Sbjct: 69  WQSKWLSINHSACAIRCL 86


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,096
Number of Sequences: 438
Number of extensions: 2870
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)