Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31339
         (319 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    25   2.1  
SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr 3|...    24   4.8  

>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -1

Query: 211 GMDVMCXASTLSRRFNSPDWAPARSEVGRRL*AAGVF 101
           G+ V+  ++ L  RF  P+W P R+ +   +   G+F
Sbjct: 197 GIGVIVASTCLLDRFRQPEWRPYRALIFVLMGLFGIF 233


>SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 347

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 292 KAGSRPAERGNRWSCRWRPPVRRPWD 215
           K  SRP   G+  SC + PP   P D
Sbjct: 243 KTSSRPDPNGSIRSCHFTPPNGGPLD 268


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,270,881
Number of Sequences: 5004
Number of extensions: 22790
Number of successful extensions: 36
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)