Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31339
         (319 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70858-1|AAB09176.2|  201|Caenorhabditis elegans Odorant respons...    27   2.9  
AF324050-1|AAK01411.1|  201|Caenorhabditis elegans Ly-6-related ...    27   2.9  
U58742-5|AAB36859.3|  711|Caenorhabditis elegans Hypothetical pr...    27   3.9  
AL110499-3|CAE18038.1|  437|Caenorhabditis elegans Hypothetical ...    26   5.1  
Z78546-7|CAB01772.1|  375|Caenorhabditis elegans Hypothetical pr...    26   6.8  
U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily as...    26   6.8  
AL023830-4|CAA19474.1|  375|Caenorhabditis elegans Hypothetical ...    26   6.8  
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin...    25   8.9  

>U70858-1|AAB09176.2|  201|Caenorhabditis elegans Odorant response
           abnormal protein2, isoform c protein.
          Length = 201

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 53  DPHPRGRWGMWELNLTKNSCRSQPAPYL 136
           D HP+ RW ++ L L   SC S   PYL
Sbjct: 39  DQHPQQRWRIYSLRLPCYSCMS---PYL 63


>AF324050-1|AAK01411.1|  201|Caenorhabditis elegans Ly-6-related
           protein ODR-2 isoform2b protein.
          Length = 201

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 53  DPHPRGRWGMWELNLTKNSCRSQPAPYL 136
           D HP+ RW ++ L L   SC S   PYL
Sbjct: 39  DQHPQQRWRIYSLRLPCYSCMS---PYL 63


>U58742-5|AAB36859.3|  711|Caenorhabditis elegans Hypothetical
           protein F31A3.5 protein.
          Length = 711

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 117 HNRRPTSDRAGAQSGLLKRRDR 182
           H+ R  SDR G +S   KRRDR
Sbjct: 620 HDCRADSDREGVESSSEKRRDR 641


>AL110499-3|CAE18038.1|  437|Caenorhabditis elegans Hypothetical
           protein Y62F5A.10 protein.
          Length = 437

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 93  TSLKTPAAHNRRPTSDR 143
           T LKTPAA +  PT+DR
Sbjct: 95  TPLKTPAAQSPTPTADR 111


>Z78546-7|CAB01772.1|  375|Caenorhabditis elegans Hypothetical
           protein T21H8.4 protein.
          Length = 375

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 99  LKTPAAHNRRPTSDRAGAQSGLLKRRDRVDAXHITSIPPS 218
           LK  A  NR+P S    + + + K + R     + SIPPS
Sbjct: 334 LKAQARANRKPLSANWTSSTLITKFKKRQTTVAVISIPPS 373


>U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 224 protein.
          Length = 465

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 237 GRQRHDHRFPRSAGREPALMAPRYTF 314
           GR   D  +PR AG +  + A  YTF
Sbjct: 326 GRHYADQLYPRCAGCDELIFANEYTF 351


>AL023830-4|CAA19474.1|  375|Caenorhabditis elegans Hypothetical
           protein T21H8.4 protein.
          Length = 375

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 99  LKTPAAHNRRPTSDRAGAQSGLLKRRDRVDAXHITSIPPS 218
           LK  A  NR+P S    + + + K + R     + SIPPS
Sbjct: 334 LKAQARANRKPLSANWTSSTLITKFKKRQTTVAVISIPPS 373


>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
           protein protein16, isoform d protein.
          Length = 1030

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 274 AERGNRWSCRWRPPVRRPW 218
           A R NR   RW+PP  RP+
Sbjct: 576 APRINRLGRRWQPPPERPY 594


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,532,394
Number of Sequences: 27780
Number of extensions: 153494
Number of successful extensions: 338
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)