Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31331
(534 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 31 0.11
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 29 0.33
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 28 0.76
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 27 1.3
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 1.3
SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|... 26 3.1
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 26 3.1
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 4.1
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 25 7.1
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha... 25 7.1
SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom... 25 7.1
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 25 9.4
SPAC5D6.06c |||UDP-GlcNAc transferase associated protein Alg14|S... 25 9.4
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 25 9.4
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 31.1 bits (67), Expect = 0.11
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +3
Query: 276 PKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSS 419
P P ++P V P +PV P T++ + P ++P +VP S
Sbjct: 221 PPQPAVAPSVSAVVPNLPVHPATAINAQSQSGNPLSNPLFQPSNVPQS 268
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 29.5 bits (63), Expect = 0.33
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = +3
Query: 249 TMQVKHQRWPKPPELSPIYLPVSPVMPVQPLT---SLTLTQTASGPETSPAS 395
T VKH P PP P+ +SP MP PLT S T S PE+ P S
Sbjct: 737 TPAVKHH--PPPP---PVRSSISPSMPPAPLTHANSSTPMNYVSQPESPPQS 783
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 28.3 bits (60), Expect = 0.76
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +3
Query: 294 SPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSSDTWDKT*ILSINSSLTLV 473
SP + +PV P QPL L + T P + + L++PS+ D + NSS +
Sbjct: 281 SPFF--TAPVEPNQPLQPLRPSMTGPVPSSMGSEATLNMPSTYGIDSNLYTNSNSSSIVQ 338
Query: 474 N 476
N
Sbjct: 339 N 339
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 27.5 bits (58), Expect = 1.3
Identities = 21/60 (35%), Positives = 27/60 (45%)
Frame = +3
Query: 342 TSLTLTQTASGPETSPASDNLSVPSSDTWDKT*ILSINSSLTLVNSDTLSDQPWVVPEVE 521
T+LT T SG ET P + + PS T + + SLT + T S P V VE
Sbjct: 722 TTLTSIVTHSGSETGPTTVYIETPSVSATTTTTTIGYSGSLT--TTLTGSSGPVVTNTVE 779
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 27.5 bits (58), Expect = 1.3
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +2
Query: 95 NQYSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAILNVQEI-LKDMASQGDYASQ 262
NQ S D+D+ ASS++S A D+D N+ +A GD +SQ
Sbjct: 3 NQSSSGSNTSDLDEESASSLVSSAASPFIDSDLETPRPNISRASTGQLAEDGDTSSQ 59
>SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 26.2 bits (55), Expect = 3.1
Identities = 19/74 (25%), Positives = 34/74 (45%)
Frame = +2
Query: 65 SAYAAPSVTINQYSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAILNVQEILKDMASQ 244
S +PSV+I +EIP + + + A DY+ T I++V ++ + S
Sbjct: 80 SVEISPSVSIQNRETDEIPSFLTSALQDLLNALAVDYLKFTPSKAWIIHVDAVV--ILSS 137
Query: 245 GDYASQASAVAQTA 286
Y + SA++ A
Sbjct: 138 SPYENILSALSLAA 151
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.2 bits (55), Expect = 3.1
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 324 MPVQPLTSLTLTQTASGPETSPASDNLSVPSSDTWDKT*ILSINSSLT 467
+P Q +++L + S P S S + S+PSS D + S SLT
Sbjct: 135 LPSQEISTLLSSSLTSSPSNSGLSLDKSLPSSPKGDSPSLSSSLPSLT 182
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 4.1
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +3
Query: 336 PLTSLTLTQTASGPETSPASDNLSVPSSDTWDKT*ILSINSSLTLVNSDT 485
PLTS T + S T+P+ + SV + + T + S NS+ S T
Sbjct: 390 PLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSASST 439
Score = 25.8 bits (54), Expect = 4.1
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +3
Query: 336 PLTSLTLTQTASGPETSPASDNLSVPSSDTWDKT*ILSINSSLTLVNSDT 485
PLTS T + S T+P+ + SV + + T + S NS+ S T
Sbjct: 504 PLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSASST 553
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.0 bits (52), Expect = 7.1
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Frame = +3
Query: 273 WPKPPELS-PIY-----LPVSPVMPVQPLTSLTLTQTASGPETSP 389
+P P +S P Y +PVSP +PV P +S + P + P
Sbjct: 287 YPHPTGISLPFYPFDSGIPVSPNIPVSPSSSFVPMYPTTFPSSKP 331
>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 25.0 bits (52), Expect = 7.1
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 180 MTPTKASPSSTFKRS*RTWPARAT-MQVKHQRWPKPPELSPIYLPV 314
M P + S S + S W T M+V R+P PPE SP +P+
Sbjct: 246 MAPERISGGS-YTISSDIWSLGLTLMEVALNRFPFPPEGSPPPMPI 290
>SPAC23H4.06 |gln1||glutamate-ammonia ligase
Gln1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 359
Score = 25.0 bits (52), Expect = 7.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 422 HVGQNLNLINQLVTNPGQLRYSVGPALGCAGGGRIY 529
+ G N++ IN V P Q Y VGP G G +++
Sbjct: 186 YAGINISGINAEVM-PSQWEYQVGPCAGIEMGDQLW 220
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 24.6 bits (51), Expect = 9.4
Identities = 15/53 (28%), Positives = 21/53 (39%)
Frame = +3
Query: 276 PKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSSDTWDK 434
P PP + P LP P M + + + P T+ N SVP + K
Sbjct: 424 PFPPFMMP-GLPQMPPMMMNAIAGQVYHNNRNPPRTNSRPSNASVPPPSSLHK 475
>SPAC5D6.06c |||UDP-GlcNAc transferase associated protein
Alg14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = +2
Query: 362 DGVRSGNFAGFRQSLGPFFG---HVGQNLNLINQL 457
+ ++S F++ L FFG H G+ LNL+N L
Sbjct: 23 NAIKSSKKKPFQKHLLVFFGSGGHTGEMLNLLNAL 57
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +2
Query: 290 IIAHLSAGIPGDACAAANVINSYTDGVRSGNFA-GF 394
+I +A + D A N+I+ Y + GNFA GF
Sbjct: 646 LIGKANAALSSDLSALENIISVYCSLMAIGNFAKGF 681
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,224,300
Number of Sequences: 5004
Number of extensions: 44984
Number of successful extensions: 183
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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