Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31330
         (397 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...   212   7e-56
Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical p...    28   2.1  
Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical pr...    28   2.1  
Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical pr...    28   2.1  
AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like pro...    28   2.1  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    27   3.7  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    27   3.7  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    27   3.7  
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p...    27   4.9  
Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical pr...    27   4.9  
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr...    27   4.9  
U41007-2|AAA82265.1|  248|Caenorhabditis elegans Hypothetical pr...    23   7.7  
Z83127-5|CAB05628.2|  575|Caenorhabditis elegans Hypothetical pr...    26   8.5  
AF016450-13|AAB65988.2|  472|Caenorhabditis elegans Hypothetical...    26   8.5  

>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score =  212 bits (518), Expect = 7e-56
 Identities = 94/114 (82%), Positives = 100/114 (87%)
 Frame = +3

Query: 21  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 200
           MGRRPARCYRY KNKPYPKSRFCRGVPD KIRIFDLG KRA VD FP CVH++S+E E L
Sbjct: 1   MGRRPARCYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHL 60

Query: 201 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQLG 362
           SSEALEA RIC NKY+VKNCGKD FH+R+R HPFHV RINKMLSCAGADRLQ G
Sbjct: 61  SSEALEAARICANKYMVKNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTG 114



 Score = 30.7 bits (66), Expect = 0.40
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = +2

Query: 356 TGMRGAFGKPQGTV 397
           TGMRGA+GKPQG V
Sbjct: 113 TGMRGAYGKPQGLV 126


>Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical
            protein F36H1.2c protein.
          Length = 1427

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 35   SKMLPVLQK*TVSEIEVLSGCT*SQDPYLR 124
            SK +P  ++ TV  ++    CT S DPYLR
Sbjct: 1042 SKGIPSAERLTVGHVKKFVPCTSSLDPYLR 1071


>Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical protein
            F36H1.2b protein.
          Length = 1379

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 35   SKMLPVLQK*TVSEIEVLSGCT*SQDPYLR 124
            SK +P  ++ TV  ++    CT S DPYLR
Sbjct: 1013 SKGIPSAERLTVGHVKKFVPCTSSLDPYLR 1042


>Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical protein
            F36H1.2a protein.
          Length = 1398

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 35   SKMLPVLQK*TVSEIEVLSGCT*SQDPYLR 124
            SK +P  ++ TV  ++    CT S DPYLR
Sbjct: 1013 SKGIPSAERLTVGHVKKFVPCTSSLDPYLR 1042


>AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like
           protein 2 protein.
          Length = 205

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +3

Query: 81  RFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGR 227
           R C  +   K  I D  K+ A ++     + +++ EYEQ++S   +AG+
Sbjct: 93  RACDFMSQLKTDISDADKQLAQLNAQAAALEMIASEYEQMASSVPDAGQ 141


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -3

Query: 143 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 42
           RS +  IE   +D+ +  TP +P+   +F+F VPVA
Sbjct: 593 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 628


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -3

Query: 143 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 42
           RS +  IE   +D+ +  TP +P+   +F+F VPVA
Sbjct: 593 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 628


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -3

Query: 143 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 42
           RS +  IE   +D+ +  TP +P+   +F+F VPVA
Sbjct: 176 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 211


>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
            protein R11A8.7a protein.
          Length = 2606

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = -2

Query: 306  RGKGEVSCGYGTD-PFRSSLRGTYCSRYVLPPKPLSSAVHIRRTPSARTVESRQRSLSSY 130
            RG   V+  + ++   +S++  TY    +  PK LSSA   R++ S    +S QRS  S+
Sbjct: 1879 RGNLSVASSFSSEGTSKSAVDSTYAPSSI--PKSLSSASIARQSASPIPQQSSQRSAKSH 1936

Query: 129  PNRR 118
             +++
Sbjct: 1937 HHQK 1940


>Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical
           protein R11A8.7d protein.
          Length = 1427

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = -2

Query: 306 RGKGEVSCGYGTD-PFRSSLRGTYCSRYVLPPKPLSSAVHIRRTPSARTVESRQRSLSSY 130
           RG   V+  + ++   +S++  TY    +  PK LSSA   R++ S    +S QRS  S+
Sbjct: 700 RGNLSVASSFSSEGTSKSAVDSTYAPSSI--PKSLSSASIARQSASPIPQQSSQRSAKSH 757

Query: 129 PNRR 118
            +++
Sbjct: 758 HHQK 761


>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
            R11A8.7a protein.
          Length = 2606

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = -2

Query: 306  RGKGEVSCGYGTD-PFRSSLRGTYCSRYVLPPKPLSSAVHIRRTPSARTVESRQRSLSSY 130
            RG   V+  + ++   +S++  TY    +  PK LSSA   R++ S    +S QRS  S+
Sbjct: 1879 RGNLSVASSFSSEGTSKSAVDSTYAPSSI--PKSLSSASIARQSASPIPQQSSQRSAKSH 1936

Query: 129  PNRR 118
             +++
Sbjct: 1937 HHQK 1940


>U41007-2|AAA82265.1|  248|Caenorhabditis elegans Hypothetical
           protein C33H5.6 protein.
          Length = 248

 Score = 23.4 bits (48), Expect(2) = 7.7
 Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 8/49 (16%)
 Frame = -1

Query: 241 LLQQIRPASKASELSCS--------YSSDTKCTHSGKSSTVALFLPKSK 119
           L+  +R  SK   + C         Y    KC HSG + T    L   K
Sbjct: 52  LVYDLRDGSKGKSIECKKYGVNCLEYLDTVKCVHSGPNDTTIRLLHLQK 100



 Score = 21.4 bits (43), Expect(2) = 7.7
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = -1

Query: 130 PKSKIRILGSGTPRQNLDFGYGLFLQYR*HLAGRRPMVIF 11
           PK + + L S    +   F    F  Y   LAG  P++ F
Sbjct: 121 PKDREKFLSSSVDGEIRMFDTRTFENYGCLLAGHTPLIAF 160


>Z83127-5|CAB05628.2|  575|Caenorhabditis elegans Hypothetical
           protein T23F6.5 protein.
          Length = 575

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 250 TRYLLQQIRPASKASELSCSYSSDTKC 170
           T  L+   +P  K  E +C++  DTKC
Sbjct: 423 TAKLIVLNKPKIKCEETNCNFEKDTKC 449


>AF016450-13|AAB65988.2|  472|Caenorhabditis elegans Hypothetical
           protein B0238.9 protein.
          Length = 472

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 12/55 (21%), Positives = 26/55 (47%)
 Frame = +1

Query: 61  INRIRNRGSVGVYLIPRSVSSIWVRRERPLTTFHCACTWCPTNMNS*AQRLWRQD 225
           + R+ + GS   + +P+  +++W R+ + L    C C      M    Q L+ ++
Sbjct: 82  VKRLASLGSARGWTVPQRRNNLWERKGQSLIGKFCRCRCDRGQMTRDKQALYEKE 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,410,168
Number of Sequences: 27780
Number of extensions: 226521
Number of successful extensions: 683
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)