Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31328
(378 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein S15|S... 180 5e-47
SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein S15|Schizosac... 180 9e-47
SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit S19... 52 3e-08
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch... 28 0.56
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po... 27 0.98
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 25 3.0
SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces pom... 25 3.9
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 25 5.2
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 25 5.2
>SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein
S15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 154
Score = 180 bits (439), Expect = 5e-47
Identities = 83/124 (66%), Positives = 95/124 (76%)
Frame = +2
Query: 5 KNRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 184
K R FR F YRGV+L+QLLD+ EQL++L H GL ++KLR+AK EA
Sbjct: 17 KKRTFRTFAYRGVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKSEA 76
Query: 185 PPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVK 364
P NEKP VKTHLRNMII+PEMVGS+VGIYNGK FNQVEI+PEMIGHYLGEFS+TYKP K
Sbjct: 77 PLNEKPATVKTHLRNMIILPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKPTK 136
Query: 365 HGRP 376
HGRP
Sbjct: 137 HGRP 140
>SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein
S15|Schizosaccharomyces pombe|chr 3|||Manual
Length = 153
Score = 180 bits (437), Expect = 9e-47
Identities = 83/124 (66%), Positives = 95/124 (76%)
Frame = +2
Query: 5 KNRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 184
K R FR F YRGV+L+QLLD+ EQL++L H GL ++KLR+AK EA
Sbjct: 16 KKRSFRTFAYRGVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKTEA 75
Query: 185 PPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVK 364
P NEKP VKTHLRNMII+PEMVGS+VGIYNGK FNQVEI+PEMIGHYLGEFS+TYKP K
Sbjct: 76 PLNEKPATVKTHLRNMIILPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKPTK 135
Query: 365 HGRP 376
HGRP
Sbjct: 136 HGRP 139
>SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit
S19|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 52.0 bits (119), Expect = 3e-08
Identities = 23/49 (46%), Positives = 35/49 (71%)
Frame = +2
Query: 209 VKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYK 355
+KT +R+ I+P MVG+ ++NGK++ V+I +MIGH LGEF+ T K
Sbjct: 50 IKTAVRSATILPRMVGAQFMVHNGKSYANVKITEDMIGHKLGEFAPTRK 98
>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 27.9 bits (59), Expect = 0.56
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 176 KEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYN 277
K A P++KP + THL +++I VG + ++
Sbjct: 60 KRARPSQKPPLRSTHLPHLLIFALFVGKHIACFH 93
>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 27.1 bits (57), Expect = 0.98
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -3
Query: 271 NADN*TDHLGNDDHVSQVSLHDLWLLIR 188
N N T H+ ++ V +V++HD+W I+
Sbjct: 18 NVPNETKHIFDEISVKEVAVHDIWKRIQ 45
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 25.4 bits (53), Expect = 3.0
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 275 NGKTFNQVEIKPEMIGHYLGEFSVTYKPV 361
N +TF+ E E + +F VT KP+
Sbjct: 829 NSETFDDFEFSVEQFNSLINQFVVTGKPI 857
>SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 287
Score = 25.0 bits (52), Expect = 3.9
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +3
Query: 18 SGSSLTGELISISSLICPMSNSWN 89
+ +TG +++ISS +C + N +N
Sbjct: 151 ASKDITGTIVAISSELCAVENQFN 174
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 24.6 bits (51), Expect = 5.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 128 LKRKPMALVKKLRRAKKEAPPNEKPEIVKTHL 223
L R+P + +K R KEA PN I++ L
Sbjct: 10 LPRRPPYMAEKARATLKEAFPNTDDAIIRAVL 41
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 24.6 bits (51), Expect = 5.2
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = +2
Query: 170 AKKEAPPNEKPEIVKTHLRNMIIV----PEMVGSIVGIYNGKTFNQVEIKPEMIG 322
A E P+ P+++ + L + + P + GS+ +Y FN V++ + G
Sbjct: 192 AASEISPSSSPQLLTSFLPSGSVSNPSSPYLQGSVGALYEADAFNFVDVMSQASG 246
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,391,034
Number of Sequences: 5004
Number of extensions: 24379
Number of successful extensions: 70
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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