Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31328
         (378 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81077-5|CAB03065.1|  151|Caenorhabditis elegans Hypothetical pr...   172   6e-44
Z66499-3|CAA91300.1|  348|Caenorhabditis elegans Hypothetical pr...    29   1.1  
M34451-1|AAA28143.1|  348|Caenorhabditis elegans protein ( C.ele...    29   1.1  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    27   5.9  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    27   5.9  
AL021493-6|CAA16394.2|  781|Caenorhabditis elegans Hypothetical ...    27   5.9  
Z46381-9|CAI58660.1|  807|Caenorhabditis elegans Hypothetical pr...    26   7.8  
Z46381-8|CAA86517.2|  808|Caenorhabditis elegans Hypothetical pr...    26   7.8  

>Z81077-5|CAB03065.1|  151|Caenorhabditis elegans Hypothetical
           protein F36A2.6 protein.
          Length = 151

 Score =  172 bits (419), Expect = 6e-44
 Identities = 80/124 (64%), Positives = 95/124 (76%)
 Frame = +2

Query: 5   KNRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 184
           K R FRKF YRGVDLDQLLDM  EQ  +L+          GLKRK +AL+ K+++AKK A
Sbjct: 14  KKRTFRKFMYRGVDLDQLLDMSREQFTKLLPCRMRRRLDRGLKRKHLALIAKVQKAKKAA 73

Query: 185 PPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVK 364
              EKP  VKTHLR+MII+PE+VG ++GIYNGK FNQ EIKPEMIG YLGEF+++YKPVK
Sbjct: 74  GVLEKPATVKTHLRDMIILPELVGGVIGIYNGKVFNQTEIKPEMIGFYLGEFAISYKPVK 133

Query: 365 HGRP 376
           HGRP
Sbjct: 134 HGRP 137


>Z66499-3|CAA91300.1|  348|Caenorhabditis elegans Hypothetical
          protein T01B7.7 protein.
          Length = 348

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 9  IVFSGSSLTGELISISSLICPMSNSWN 89
          IVFSG++L   L + +SL   +SN WN
Sbjct: 11 IVFSGATLLVSLFAAASLYSQVSNIWN 37


>M34451-1|AAA28143.1|  348|Caenorhabditis elegans protein (
          C.elegans collagen (rol-6) gene, complete cds. ).
          Length = 348

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 9  IVFSGSSLTGELISISSLICPMSNSWN 89
          IVFSG++L   L + +SL   +SN WN
Sbjct: 11 IVFSGATLLVSLFAAASLYSQVSNIWN 37


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 173   KKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIY 274
             K+  P +E  EIV     + +I+ E+ G  VG+Y
Sbjct: 14489 KEIIPTDENTEIVNEGSMSALIIHELAGEDVGLY 14522


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 173   KKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIY 274
             K+  P +E  EIV     + +I+ E+ G  VG+Y
Sbjct: 14489 KEIIPTDENTEIVNEGSMSALIIHELAGEDVGLY 14522


>AL021493-6|CAA16394.2|  781|Caenorhabditis elegans Hypothetical
           protein Y51A2B.6 protein.
          Length = 781

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +2

Query: 134 RKPMALVKKLRRAKKEAPPNEK--PEIVKTHLRNMIIVPEMVGSIVGIYNGKTF 289
           +K + +++K+R   K++  N +  P +V   L+N+  V E+   +    N KTF
Sbjct: 560 QKVIQVIQKMRNLDKDSVQNIQGIPSVVSEFLKNLAKVREISDKMKENSNNKTF 613


>Z46381-9|CAI58660.1|  807|Caenorhabditis elegans Hypothetical
           protein M01F1.4b protein.
          Length = 807

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 306 LISTWLKVFPL*MPTIEPTISGTMIMFLK*VFT 208
           L STW K+ P     +E T++G +  F+K +F+
Sbjct: 348 LDSTWQKMSPSVTKIVEITVAGPLRQFVKMLFS 380


>Z46381-8|CAA86517.2|  808|Caenorhabditis elegans Hypothetical
           protein M01F1.4a protein.
          Length = 808

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 306 LISTWLKVFPL*MPTIEPTISGTMIMFLK*VFT 208
           L STW K+ P     +E T++G +  F+K +F+
Sbjct: 349 LDSTWQKMSPSVTKIVEITVAGPLRQFVKMLFS 381


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,775,599
Number of Sequences: 27780
Number of extensions: 138764
Number of successful extensions: 417
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)