Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31325
         (619 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023843-1|CAA19522.2|  260|Caenorhabditis elegans Hypothetical ...    29   2.0  

>AL023843-1|CAA19522.2|  260|Caenorhabditis elegans Hypothetical
           protein Y48A6A.1 protein.
          Length = 260

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
 Frame = +1

Query: 88  FELQIAATNLGQWFRE--*RIDIDSTKTTXXLSKGVALPSTTSAXISSRLTPFPASKSLA 261
           FE  ++ATNLGQ   E   RID    +T          P T     SS +T   A KS+ 
Sbjct: 93  FETLLSATNLGQSVVESALRIDCLDERTAGEYFCEATSPCTQPVVTSSTVTINKAPKSIT 152

Query: 262 SAYYGLRSP 288
                +R P
Sbjct: 153 GTCKSIRQP 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,808,232
Number of Sequences: 27780
Number of extensions: 288388
Number of successful extensions: 665
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)