Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31324
         (413 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    27   1.2  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    26   2.0  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   6.1  

>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 10/45 (22%), Positives = 23/45 (51%)
 Frame = +1

Query: 256 MVHGTKIMMVMQTIYFYDDIIEHPDSNAVHTVSPASSEIKDGHDI 390
           M H  K+ M++Q   + D   +  D+N ++  S  +++ +  H +
Sbjct: 548 MYHSIKVSMILQPDRYLDMNFDFNDTNKINNPSSTANQTRHFHSV 592


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -2

Query: 310 RH-RNRLFALPS*FLYH-EPLVKVSSFCEHF 224
           RH +N    +PS  LYH E L+  SSF EHF
Sbjct: 876 RHLKNSALLIPS-ILYHIENLLVASSFIEHF 905


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 315 DIVIEIDCLHYHHDFC 268
           D VI++ C HY H+ C
Sbjct: 407 DDVIQLPCKHYFHENC 422


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,663,974
Number of Sequences: 5004
Number of extensions: 31282
Number of successful extensions: 69
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)