Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31324
         (413 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical pr...    29   1.8  
AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein.     29   1.8  
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    27   5.4  
U50301-1|AAB37051.1|  269|Caenorhabditis elegans Hypothetical pr...    27   5.4  

>Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical
           protein C09D8.1a protein.
          Length = 2180

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 5/33 (15%)
 Frame = +1

Query: 85  MLTW-PC-QPDFTLT---VYYTPDMVTVPCRQY 168
           ++ W PC QP+  +T   VYYT D+VT P R++
Sbjct: 454 LVKWGPCEQPNGLITGYKVYYTNDLVTTPIREW 486


>Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical
           protein C09D8.1a protein.
          Length = 2180

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 5/33 (15%)
 Frame = +1

Query: 85  MLTW-PC-QPDFTLT---VYYTPDMVTVPCRQY 168
           ++ W PC QP+  +T   VYYT D+VT P R++
Sbjct: 454 LVKWGPCEQPNGLITGYKVYYTNDLVTTPIREW 486


>AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein.
          Length = 2200

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 5/33 (15%)
 Frame = +1

Query: 85  MLTW-PC-QPDFTLT---VYYTPDMVTVPCRQY 168
           ++ W PC QP+  +T   VYYT D+VT P R++
Sbjct: 454 LVKWGPCEQPNGLITGYKVYYTNDLVTTPIREW 486


>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
           protein F29G6.1 protein.
          Length = 1170

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 388 CHDRL*SLTMQDSLCAQRCYRGV 320
           CH+R    T++D +C + C R V
Sbjct: 357 CHERSPQFTLKDEICPRTCSRDV 379


>U50301-1|AAB37051.1|  269|Caenorhabditis elegans Hypothetical
           protein F20D6.6 protein.
          Length = 269

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +3

Query: 171 LT*LNKSLLYMNTL-KCDVKCSQKLLTFTNGSWYKNHDGNANNLFL 305
           +T LN+ LL +N +   ++K  + +++  NG+ ++NH+      FL
Sbjct: 122 MTVLNRKLLCVNGMVTSNIKNEKNVVSVKNGNMFENHNTRVEVQFL 167


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,427,991
Number of Sequences: 27780
Number of extensions: 184189
Number of successful extensions: 385
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)