Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31316
         (326 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo...    58   4e-10
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|...    25   2.9  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    25   3.8  
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy...    24   6.7  
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp...    23   8.8  

>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 57.6 bits (133), Expect = 4e-10
 Identities = 25/57 (43%), Positives = 39/57 (68%)
 Frame = +2

Query: 122 IFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAXVDSMVVGQVISSS 292
           ++IV A RTP G+FGG F +  AT+L +IA  GAL+   + P+ VD + +G V+S++
Sbjct: 6   VYIVSAVRTPMGSFGGSFASLPATKLGSIAIKGALERVNIKPSDVDEVFMGNVVSAN 62


>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 521

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 6/13 (46%), Positives = 12/13 (92%)
 Frame = +1

Query: 73  VNWIGIILNHVCF 111
           +NWI I+L+++C+
Sbjct: 421 INWINILLSYICY 433


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -3

Query: 195 SVADVLRKTPPKVPNGVLLAPTMKIPLTEADMIQNYTYPVNVEL 64
           SV+  +R     +PN     P    P  +A+ + N ++PV+ +L
Sbjct: 755 SVSSNVRPINGSIPNAQPSVPGQAQPAAKANSVGNTSFPVDSKL 798


>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 589

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 243 PRLXSTAWSWAKSSLHHKLTES 308
           PR  +T++S   +  HHKLT S
Sbjct: 206 PRSSTTSYSIRDADKHHKLTTS 227


>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
           subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +2

Query: 29  VRSSAIIKYI*FSSTLTG*V*F*IMSASVKGIFIVGAKRTPFGTFGGVFRNTSATE 196
           V   AI+  + F    TG       +A V+G  +V   +T   TFGG +RN  + E
Sbjct: 37  VEQDAIVSEVTFGEASTG-------AAVVQGS-LVSNDQTHARTFGGPYRNQGSVE 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,348,276
Number of Sequences: 5004
Number of extensions: 24416
Number of successful extensions: 66
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)