Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31316
         (326 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81546-11|CAB04455.2|  394|Caenorhabditis elegans Hypothetical p...    75   2e-14
U41105-5|AAA82398.1|  390|Caenorhabditis elegans Hypothetical pr...    50   4e-07
U41105-4|AAA82397.2|  407|Caenorhabditis elegans 3-ketoacyl-coa ...    48   2e-06
U41105-8|AAA82403.1|  460|Caenorhabditis elegans Hypothetical pr...    43   5e-05
M77697-2|AAA27897.2|  448|Caenorhabditis elegans Hypothetical pr...    38   0.002
AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical ...    27   3.2  
U61953-3|AAC48071.3|  491|Caenorhabditis elegans Hypothetical pr...    26   5.6  
U40030-7|AAT81189.1|  525|Caenorhabditis elegans Hypothetical pr...    26   5.6  
U67079-1|AAB40716.1|  539|Caenorhabditis elegans C2-HC type zinc...    26   7.4  
U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical p...    26   7.4  
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ...    25   9.7  
AC024777-4|AAF60561.3|  627|Caenorhabditis elegans Hypothetical ...    25   9.7  

>Z81546-11|CAB04455.2|  394|Caenorhabditis elegans Hypothetical
           protein F53A2.7 protein.
          Length = 394

 Score = 74.5 bits (175), Expect = 2e-14
 Identities = 37/69 (53%), Positives = 47/69 (68%)
 Frame = +2

Query: 116 KGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAXVDSMVVGQVISSSQ 295
           K +FIVGAKRT FGTFGG  +  SAT+L  +A+  ALK A V    VD ++ G V++SS+
Sbjct: 4   KCVFIVGAKRTAFGTFGGKLKGLSATDLGVVASQAALKHANVGADAVDHVIFGNVVASSR 63

Query: 296 TDGIYTPRH 322
            DGIY  RH
Sbjct: 64  -DGIYLSRH 71


>U41105-5|AAA82398.1|  390|Caenorhabditis elegans Hypothetical
           protein T02G5.7 protein.
          Length = 390

 Score = 50.0 bits (114), Expect = 4e-07
 Identities = 22/58 (37%), Positives = 35/58 (60%)
 Frame = +2

Query: 110 SVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAXVDSMVVGQVI 283
           S K +FI+   RTP G + G F N  A EL T+A   A++ +GV+P  ++ ++ G V+
Sbjct: 2   SDKKVFILSGARTPIGAYRGSFANFGAVELGTVAAKAAIERSGVAPEKIEEVIGGCVL 59


>U41105-4|AAA82397.2|  407|Caenorhabditis elegans 3-ketoacyl-coa
           thiolase protein 1 protein.
          Length = 407

 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 23/61 (37%), Positives = 35/61 (57%)
 Frame = +2

Query: 110 SVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAXVDSMVVGQVISS 289
           S K  FIVGA RTP G+F     + +A EL ++A   AL+   V P+ +  + +GQV  +
Sbjct: 20  SNKHAFIVGAARTPIGSFRSSLSSVTAPELASVAIKAALERGAVKPSSIQEVFLGQVCQA 79

Query: 290 S 292
           +
Sbjct: 80  N 80


>U41105-8|AAA82403.1|  460|Caenorhabditis elegans Hypothetical
           protein T02G5.4 protein.
          Length = 460

 Score = 43.2 bits (97), Expect = 5e-05
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
 Frame = +2

Query: 110 SVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAXVD--SMVVGQV 280
           S K  FIVGA RTP G+F     + +A EL ++A   AL+   V P+ +   ++ +GQV
Sbjct: 98  SNKDAFIVGAARTPIGSFRSSLSSVTAPELASVAIKAALERGAVKPSSIQEANVFLGQV 156


>M77697-2|AAA27897.2|  448|Caenorhabditis elegans Hypothetical
           protein B0303.3 protein.
          Length = 448

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 20/70 (28%), Positives = 35/70 (50%)
 Frame = +2

Query: 98  IMSASVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAXVDSMVVGQ 277
           +   ++  I +V A RTPF   G VF++  A +LQ  A    +++  +    +D ++ G 
Sbjct: 18  VAKKNMPNIVLVDAVRTPFVVSGTVFKDLMAVDLQKEAIKALVEKTKLPYEQLDHIICGT 77

Query: 278 VISSSQTDGI 307
           VI   +T  I
Sbjct: 78  VIQECKTSNI 87


>AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical
            protein F52C12.4 protein.
          Length = 1635

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +1

Query: 151  VWYLRR-SLPQHIRDRTADDSHCRC 222
            ++YLRR SLP H+    A+  H RC
Sbjct: 1508 IYYLRRLSLPSHLFSWIAERHHIRC 1532


>U61953-3|AAC48071.3|  491|Caenorhabditis elegans Hypothetical
           protein R08C7.5 protein.
          Length = 491

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = -3

Query: 237 PASFSAPTVAIVCSSVADVLRKTPPKVPNGVLLAPTMKIPLTEA 106
           P+    PT       V  +    PPK+P  V   P  K P+ E+
Sbjct: 310 PSKEEKPTAKTAAPPVKLLTSSPPPKIPKTVAQPPKEKKPVMES 353


>U40030-7|AAT81189.1|  525|Caenorhabditis elegans Hypothetical
           protein T13C2.2 protein.
          Length = 525

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -3

Query: 192 VADVLRKTPPKVPNGVLLAPTMKIPLTEADMIQNYTYPVNVELN 61
           + ++L++TPPK+       P   I +T   +  ++  P N E N
Sbjct: 162 ILEILKETPPKLDGATFEKPEKPIEVT--SLPPSFAIPKNTESN 203


>U67079-1|AAB40716.1|  539|Caenorhabditis elegans C2-HC type zinc
           finger proteinC.e-MyT1 protein.
          Length = 539

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +2

Query: 194 ELQTIATVGALKEAGVSPAXVDSMVVGQVISSSQTDGIYTP 316
           E+ T   + +   +  SP+ VDS++ G V+++ +T    +P
Sbjct: 150 EIFTSGNMMSATHSDTSPSDVDSVLDGDVVTAEETSSSKSP 190


>U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical
            protein C56C10.12 protein.
          Length = 1599

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 237  PASFSAPTVAIVCSSVADVLRKTPPK 160
            P+S   P V ++CS+++    K PP+
Sbjct: 1004 PSSTPTPIVKLICSAISYYSAKLPPR 1029


>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
           protein H02F09.3 protein.
          Length = 1275

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
 Frame = -3

Query: 303 PSVCDEEMTWPTTMLST*AGDTPASFS-APTVAIVCSSVADVLRKTPPKVPNGVLLAPT- 130
           P V    M   T  +++ A +T  + S +PT  +   S A     T   VP   +  PT 
Sbjct: 229 PPVTTSTMATTTANVTSAAPNTTVTISTSPTTVVTVPSTAQTSSTTTVTVPTTTVTGPTT 288

Query: 129 -MKIPLT 112
            + +P T
Sbjct: 289 VVTVPTT 295


>AC024777-4|AAF60561.3|  627|Caenorhabditis elegans Hypothetical
           protein Y42H9AR.4 protein.
          Length = 627

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +1

Query: 175 PQHIRDRTADDSHCRCAEGGRSVPGSXRQHGRGPS 279
           P+ ++    DD + + A G  S+      H +GP+
Sbjct: 369 PRQVKKERMDDEYEKMANGHSSLTNGVNGHSKGPT 403


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,586,488
Number of Sequences: 27780
Number of extensions: 142134
Number of successful extensions: 381
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)