Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31316
         (326 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.31 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   3.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   3.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    20   6.6  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 0.31
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -3

Query: 210  AIVCSSVADVLRKTPPKVPNGVLLAPTMKIPLTEADMIQNYTYPVN 73
            A+V SS + ++   PP  PNGV+   T+      A+   +   P N
Sbjct: 1188 ALVMSSESILVSWRPPSQPNGVITQYTVYTKADNAEEPTSQKVPPN 1233


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -3

Query: 243  DTPASFSAPTVAIVCSSVADVLRKTPPKVPNGVL 142
            D P S  A    +V S  A  +   PP  PNG++
Sbjct: 1212 DVPGS-PADIKVVVSSPQALFISWLPPLEPNGII 1244


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -3

Query: 243  DTPASFSAPTVAIVCSSVADVLRKTPPKVPNGVL 142
            D P S  A    +V S  A  +   PP  PNG++
Sbjct: 1208 DVPGS-PADIKVVVSSPQALFISWLPPLEPNGII 1240


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 10/41 (24%), Positives = 16/41 (39%)
 Frame = -3

Query: 243 DTPASFSAPTVAIVCSSVADVLRKTPPKVPNGVLLAPTMKI 121
           DT  S  +P V        +   + PP  P  +   P+M +
Sbjct: 613 DTNQSCPSPPVTTKRDGTQETEERLPPLPPKRIRKMPSMPL 653


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,763
Number of Sequences: 438
Number of extensions: 1631
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7217694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)