Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31315
         (425 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51997-2|AAG24069.1|  332|Caenorhabditis elegans Serpentine rece...    28   3.2  
U50312-5|AAA92322.1|  369|Caenorhabditis elegans Hypothetical pr...    27   4.3  
Z82079-1|CAB04949.1| 1529|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z80344-7|CAB02491.1| 1529|Caenorhabditis elegans Hypothetical pr...    27   7.4  
U59211-1|AAB09670.1|  420|Caenorhabditis elegans embryonic membr...    27   7.4  
U53343-3|AAA96220.2|  420|Caenorhabditis elegans Innexin protein...    27   7.4  

>U51997-2|AAG24069.1|  332|Caenorhabditis elegans Serpentine
           receptor, class h protein19 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 19  CIFNTKQIKVNYVLCDLTFIDLTLVLTSSV 108
           CIFN K  K +Y +    ++  TL++T+S+
Sbjct: 119 CIFNYKTHKFSYFVKSYVYLIRTLIITTSI 148


>U50312-5|AAA92322.1|  369|Caenorhabditis elegans Hypothetical
           protein B0222.5 protein.
          Length = 369

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 179 CLPFTQKGYD*NQSHFKINKEVYF 108
           C PF  KG   NQ+ ++ + E YF
Sbjct: 216 CFPFEHKGCGGNQNSYRTSSECYF 239


>Z82079-1|CAB04949.1| 1529|Caenorhabditis elegans Hypothetical
           protein F15D4.1 protein.
          Length = 1529

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 1   LVLNVYCIFNTKQIKVNYVLCDLT-FIDLTLVLTSSVKYTSLF 126
           L LN+ C FN  Q+   Y   DL+  +DL   LT    + SL+
Sbjct: 766 LFLNILCQFNASQLAEFYCHFDLSEDVDLNTFLTRLELHNSLW 808


>Z80344-7|CAB02491.1| 1529|Caenorhabditis elegans Hypothetical
           protein F15D4.1 protein.
          Length = 1529

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 1   LVLNVYCIFNTKQIKVNYVLCDLT-FIDLTLVLTSSVKYTSLF 126
           L LN+ C FN  Q+   Y   DL+  +DL   LT    + SL+
Sbjct: 766 LFLNILCQFNASQLAEFYCHFDLSEDVDLNTFLTRLELHNSLW 808


>U59211-1|AAB09670.1|  420|Caenorhabditis elegans embryonic membrane
           protein protein.
          Length = 420

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
 Frame = +3

Query: 69  NVHRFD----LSVNI-ECKIYLFIYFKMRLILIIAFL 164
           NVHR+     L +N+   KIYLFI+F    +LI  F+
Sbjct: 259 NVHRYTVQCVLMINMFNEKIYLFIWFWFVFVLITTFI 295


>U53343-3|AAA96220.2|  420|Caenorhabditis elegans Innexin protein 3
           protein.
          Length = 420

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
 Frame = +3

Query: 69  NVHRFD----LSVNI-ECKIYLFIYFKMRLILIIAFL 164
           NVHR+     L +N+   KIYLFI+F    +LI  F+
Sbjct: 259 NVHRYTVQCVLMINMFNEKIYLFIWFWFVFVLITTFI 295


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,974,308
Number of Sequences: 27780
Number of extensions: 132616
Number of successful extensions: 191
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)