Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31312
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    25   0.93 
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    25   0.93 
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    25   0.93 
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    25   0.93 
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    24   1.6  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   2.9  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    23   3.8  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   6.6  

>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 694 NMRNYTQILVKLKYKLQDVQKIKINVEYKIGSPPP 590
           N  NY     KL Y +  +++I I V    G+ PP
Sbjct: 101 NNNNYNNNCKKLYYNINYIEQIPIPVPVYYGNFPP 135


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 694 NMRNYTQILVKLKYKLQDVQKIKINVEYKIGSPPP 590
           N  NY     KL Y +  +++I I V    G+ PP
Sbjct: 101 NNNNYNNNCKKLYYNINYIEQIPIPVPVYYGNFPP 135


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 694 NMRNYTQILVKLKYKLQDVQKIKINVEYKIGSPPP 590
           N  NY     KL Y +  +++I I V    G+ PP
Sbjct: 101 NNNNYNNNCKKLYYNINYIEQIPIPVPVYYGNFPP 135


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 697 NNMRNYTQILVKLKYKLQDVQKIKINVEYKIGSPPP 590
           +N  NY     KL Y + ++++I + V    G+ PP
Sbjct: 324 HNNNNYKNYNKKLYYNIINIEQIPVPVPVYCGNFPP 359


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 697 NNMR-NYTQILVKLKYKLQDVQKIKINVEYKIGSPPP 590
           NN + NY     KL Y +  +++I I V    G+ PP
Sbjct: 94  NNYKYNYNNNCKKLYYNINYIEQIPIPVPVYYGNFPP 130


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 597 GDPILYSTFILIFW 638
           G PIL+  FI+++W
Sbjct: 369 GFPILFMLFIILYW 382


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -2

Query: 694 NMRNYTQILVKLKYKLQDVQKIKINVEYKIGSPPP 590
           N  NY      L Y + ++++I + V    G+ PP
Sbjct: 323 NYNNYNNNYKPLYYNIINIEQIPVPVPIYCGNFPP 357


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 694 NMRNYTQILVKLKYKLQDVQ 635
           NMR Y     KL Y ++DV+
Sbjct: 210 NMREYNDPEYKLDYFMEDVE 229


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,054
Number of Sequences: 438
Number of extensions: 3098
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)