Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31311
(457 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0257 + 22439915-22440275,22440280-22440627,22440962-224410... 30 0.77
11_01_0346 - 2589111-2589220,2589613-2589852,2589956-2590028,259... 29 1.3
07_03_1175 - 24555965-24556117,24557809-24558264,24558270-245584... 29 2.3
04_02_0011 - 8513471-8513673,8513815-8513869 29 2.3
04_01_0511 + 6678765-6678801,6678904-6679923,6680012-6680718 28 3.1
11_03_0107 + 10084234-10084348,10084830-10084834,10085351-100858... 27 5.4
02_05_0504 - 29590852-29591862 27 5.4
08_01_0686 + 6049563-6050900 27 7.2
11_06_0196 + 21144094-21144483 27 9.5
10_07_0191 + 13934410-13934940 27 9.5
07_01_1078 - 9707125-9707640,9708091-9708306,9708312-9709685,970... 27 9.5
06_01_0421 - 3000486-3000595,3000909-3001148,3001659-3001722,300... 27 9.5
05_04_0258 + 19490256-19491569 27 9.5
>03_05_0257 +
22439915-22440275,22440280-22440627,22440962-22441015,
22441390-22441763
Length = 378
Score = 30.3 bits (65), Expect = 0.77
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -1
Query: 211 GGARSPLRVPGSGCDPWRYPRVGLRHCSSLPNRRHHRWQ 95
GGA L++PGSGC ++ + +RRHHRW+
Sbjct: 290 GGAGEGLKLPGSGCS-------AMKMLFAEWSRRHHRWR 321
>11_01_0346 - 2589111-2589220,2589613-2589852,2589956-2590028,
2590301-2590606,2590698-2590912,2591461-2591755,
2591901-2592065,2592142-2592738,2593029-2593115,
2593203-2593523,2594047-2596071
Length = 1477
Score = 29.5 bits (63), Expect = 1.3
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -2
Query: 243 LVVQSRQVLPMVVHGAHCGYQGADAIHGGIQG 148
L ++ RQ P+V+HG C ++G D I GI G
Sbjct: 1234 LKIKYRQDAPLVLHGITCTFEGGDKI--GIVG 1263
>07_03_1175 -
24555965-24556117,24557809-24558264,24558270-24558436,
24558468-24558756,24559620-24559726,24559841-24559909,
24560001-24560109
Length = 449
Score = 28.7 bits (61), Expect = 2.3
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -2
Query: 204 HGAHCGYQGADAIHGGIQGLACAIVPASPTAGTTGGRLRDSRSY 73
+GA G G++ HGG G I A TTG +R SRS+
Sbjct: 378 YGAAHGNNGSNFSHGGGFGAQMFIRIAGTGFSTTGKSIRSSRSH 421
>04_02_0011 - 8513471-8513673,8513815-8513869
Length = 85
Score = 28.7 bits (61), Expect = 2.3
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +2
Query: 197 APCTTIGSTCLDCTTKQVCTKVGGIQRACLDPT-LPYCNLGECSATP 334
AP T + C+D T K +C+ + C L YCN C+ +P
Sbjct: 33 APITEVPKPCVDATCKAICSDKYQSKGECFSTDGLYYCNF--CANSP 77
>04_01_0511 + 6678765-6678801,6678904-6679923,6680012-6680718
Length = 587
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = -2
Query: 207 VHGAHCGYQGADAIHGGIQGLACAIVPASPTA 112
VHG GY GA + G I GL IV SP+A
Sbjct: 243 VHGQ--GYDGASNMKGHINGLKKLIVDESPSA 272
>11_03_0107 +
10084234-10084348,10084830-10084834,10085351-10085803,
10086143-10086267,10087282-10087345,10087452-10087508,
10088475-10088485,10089923-10090802
Length = 569
Score = 27.5 bits (58), Expect = 5.4
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Frame = +2
Query: 233 CTTKQVCTKVGGIQRA--CLDPTL--PYCNLGECSATPAEXCEPASGASVA 373
C+T + T +G I A P+L P CN +A + CEP GA+++
Sbjct: 31 CSTVEQATGLGYIVLALQAYTPSLHPPPCNPAATTAAASTTCEPVRGANLS 81
>02_05_0504 - 29590852-29591862
Length = 336
Score = 27.5 bits (58), Expect = 5.4
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 210 VVHGAHCGYQGADAIHGGIQGLACAIVPASPTAGTTGG 97
V G H G G+ + G Q + A+VP +G+ GG
Sbjct: 54 VGEGDHAGGSGSGGVGGDHQPSSSAMVPVEGGSGSAGG 91
>08_01_0686 + 6049563-6050900
Length = 445
Score = 27.1 bits (57), Expect = 7.2
Identities = 32/108 (29%), Positives = 44/108 (40%), Gaps = 11/108 (10%)
Frame = +3
Query: 69 SSSFGCPSTCHRWCRRLG----RLEQW----RRPT-LGYLHGSHPLPGT--RSGLRAPPS 215
+S F C + C RW R + +W R P+ LG+ H + R + P+
Sbjct: 31 TSLFRCAAACKRWLRLIADQALLRRRWPPGTRVPSLLGFFAQRHQIQANARRKLTKLFPT 90
Query: 216 VVLA*IALPSKFVQK*EVYRGRVWTRLFLTATSENAPLPPLXDVNRPL 359
+A PS+ V GR RLFLT NA L D +PL
Sbjct: 91 RAPPLVAAPSRGTGDPPVSTGR-RRRLFLTDFVRNAAGAGLFDQAKPL 137
>11_06_0196 + 21144094-21144483
Length = 129
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 114 RLGRLEQWRRPTLGYLHGSHPLPGTRSGLRAPPSV 218
R G WRR G S +P T+S + PP+V
Sbjct: 46 RAGEGASWRRVGRGRGSASTAIPTTKSAVAKPPAV 80
>10_07_0191 + 13934410-13934940
Length = 176
Score = 26.6 bits (56), Expect = 9.5
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = +3
Query: 66 ASSSFGCPSTCHRWCRRLGRL---EQWRR 143
A++S G PSTC R +L L EQWRR
Sbjct: 103 AAASPGSPSTCRRTALQLLDLQVPEQWRR 131
>07_01_1078 -
9707125-9707640,9708091-9708306,9708312-9709685,
9709704-9710044,9710120-9710198
Length = 841
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/55 (23%), Positives = 24/55 (43%)
Frame = +2
Query: 200 PCTTIGSTCLDCTTKQVCTKVGGIQRACLDPTLPYCNLGECSATPAEXCEPASGA 364
P ++ +D T +C + G + P + +C++ + A P E SGA
Sbjct: 563 PFLSLAGGNIDVGTGSICFHING--KFEFQPRMEHCSMNQVRAKPVEYSRVRSGA 615
>06_01_0421 - 3000486-3000595,3000909-3001148,3001659-3001722,
3001969-3002274,3002365-3002579,3003047-3003341,
3003487-3003651,3003745-3004341,3004855-3004941,
3005022-3005342,3006218-3008242
Length = 1474
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 243 LVVQSRQVLPMVVHGAHCGYQGADAIHGGIQG 148
L ++ RQ P+V+HG C ++G I GI G
Sbjct: 1234 LKIKYRQDAPLVLHGITCTFEGGHKI--GIVG 1263
>05_04_0258 + 19490256-19491569
Length = 437
Score = 26.6 bits (56), Expect = 9.5
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Frame = +2
Query: 194 WAPCTT--IGSTC--LDCTTKQV-CTKVGGIQRACLDPTLPYCNLGECSATP 334
W C T + S+ + C +K TK GG +C P C G CS P
Sbjct: 73 WVDCDTGYVSSSYARVPCGSKPCRLTKTGGCFNSCFGAPSPACLNGTCSGFP 124
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,214,906
Number of Sequences: 37544
Number of extensions: 272184
Number of successful extensions: 795
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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