Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31308
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    30   0.34 
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    26   5.6  
SPBC13G1.04c |||alkB homolog|Schizosaccharomyces pombe|chr 2|||M...    25   9.7  

>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -1

Query: 545 NSRPKLAKSVQPFSSFSETNEQQLIFILYQIKNNHNIKLIHRIIL 411
           N+  KLA+ +  F    E+  Q L+F L      H ++ IH+I+L
Sbjct: 249 NAVLKLAQLISSFEKLPESVRQYLLFHLLSRCGKHAVQNIHKILL 293


>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -3

Query: 204 YRIYIGKTHRFRYNVVFFQTENMRLPSPQEFGSEDLVNHRPRVLET 67
           Y+++I  TH+F Y + F       + SPQ +      +H+P V  T
Sbjct: 16  YKLFI--THKFSYLLRFETVTLNNIRSPQFYAKLTFSHHQPTVSGT 59


>SPBC13G1.04c |||alkB homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 186 KTHRFRYNVVFFQTENMRLPSPQEFGSEDLVNHRPRV 76
           K ++ R + +   +E +    PQ FG E LV  +PRV
Sbjct: 12  KRYKCRADTIPDMSEVLDPNDPQSFGFEALVEIKPRV 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,752,405
Number of Sequences: 5004
Number of extensions: 56619
Number of successful extensions: 140
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)