Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31308
         (662 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1215 + 11615000-11615120,11615244-11615347                       29   4.4  
07_01_1118 - 10316298-10316710,10316789-10317264,10317397-103177...    29   4.4  
06_01_0788 - 5895600-5896378,5896519-5896846                           28   7.6  
02_01_0105 - 775740-776624,777633-778268                               28   7.6  

>07_01_1215 + 11615000-11615120,11615244-11615347
          Length = 74

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -1

Query: 656 KGIRPTGDTSKGKTKLLLLFNSEHL 582
           KGIR  G+TSKGK K   L  S +L
Sbjct: 40  KGIRKMGNTSKGKVKQTYLIISPYL 64


>07_01_1118 -
           10316298-10316710,10316789-10317264,10317397-10317735,
           10317798-10317895,10319007-10319045
          Length = 454

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = -1

Query: 182 LTVLDTMWFSSKRRTCVSHLLKNLAARILSTTVRVCWKQHTLRAPSVASL 33
           L V+D +W  S     +S LL N  +  +  T R+   +H  RA S ASL
Sbjct: 48  LIVIDNVWSISAWEAILSRLLDNKCSGRIIVTTRI---EHVARACSSASL 94


>06_01_0788 - 5895600-5896378,5896519-5896846
          Length = 368

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +1

Query: 502 LENGWTDLANFGLELFVGSPE 564
           +ENG+TDL +FG  LF+ +P+
Sbjct: 304 IENGYTDLVSFG-RLFLANPD 323


>02_01_0105 - 775740-776624,777633-778268
          Length = 506

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = +1

Query: 1   GAPVPPPGPRYKLATEGALRVCCFQHTRTVVDKILAAKFLRR 126
           GAP PPP P     T G+L VC   + RT +D I+ +  L R
Sbjct: 295 GAPPPPPRP----GTPGSLLVC---NHRTALDPIIVSIALGR 329


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,102,703
Number of Sequences: 37544
Number of extensions: 344168
Number of successful extensions: 824
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)